SRR3552746_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552746_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	693872
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC	5008	0.7217469504461919	No Hit
GCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC	4234	0.6101989992390527	No Hit
CTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGCT	4033	0.5812311204371988	No Hit
TCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC	1780	0.256531464016418	No Hit
ACTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC	1312	0.18908386561210136	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCC	1233	0.1776984804113727	No Hit
GCCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTG	893	0.12869808840823668	No Hit
CGCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTG	765	0.11025088200705606	No Hit
ACCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTG	723	0.10419789240666867	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTTG	20	7.031351E-4	45.000004	1
ACGCATT	40	6.8084773E-9	45.000004	17
CCGATCA	20	7.031351E-4	45.000004	11
CCGTGTT	20	7.031351E-4	45.000004	21
TTCACCG	35	1.2109922E-7	45.000004	23
GTTAGCG	40	6.8084773E-9	45.000004	1
CACGACG	20	7.031351E-4	45.000004	1
CGACAAT	35	1.2109922E-7	45.000004	20
TCGATAG	35	1.2109922E-7	45.000004	1
TCATCGA	35	1.2109922E-7	45.000004	16
TTAGTCG	20	7.031351E-4	45.000004	1
CATCGAC	35	1.2109922E-7	45.000004	17
ACGTAGC	20	7.031351E-4	45.000004	44
CACCGCG	20	7.031351E-4	45.000004	27
CGCCGCT	20	7.031351E-4	45.000004	13
TGTACGA	20	7.031351E-4	45.000004	19
CGATCAT	20	7.031351E-4	45.000004	10
ATCGACA	35	1.2109922E-7	45.000004	18
CTGTGCG	20	7.031351E-4	45.000004	1
GGCTACG	40	6.8084773E-9	45.000004	1