SRR3552743_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552743_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2235865
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	7445	0.33298074794318977	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGCT	5144	0.23006755774610724	Illumina Single End Adapter 1 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	5080	0.2272051309001214	Illumina Single End Adapter 1 (95% over 21bp)
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	3787	0.16937516352731494	No Hit
TCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	3502	0.1566284189787845	Illumina Single End Adapter 1 (95% over 21bp)
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	2794	0.1249628219950668	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2339	0.10461275613688661	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACCCGA	20	7.03472E-4	45.0	41
TACGCAC	20	7.03472E-4	45.0	1
CAATCGA	35	1.2126111E-7	45.0	31
CGAATAT	220	0.0	40.909092	14
CGTTAGG	275	0.0	40.090908	2
GTCGACG	45	1.9297659E-8	40.0	1
TACGAAT	225	0.0	40.0	12
AAGCACG	80	0.0	39.375	1
GCGTTAG	155	0.0	39.19355	1
TACGGGA	670	0.0	38.955223	4
GCGAGAC	875	0.0	38.057144	21
AACACGT	770	0.0	37.987015	41
CACGACC	880	0.0	37.840908	27
CGTATGG	250	0.0	37.8	2
TACGGGT	150	0.0	37.5	4
CGTATAG	30	1.1402673E-4	37.499996	2
TGTTACG	80	0.0	36.5625	1
CACAACG	770	0.0	36.23377	12
GCGTAAG	230	0.0	36.195652	1
CAATTCG	25	0.002107534	36.0	31