SRR3552741_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552741_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1001286
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	7192	0.7182762966824663	No Hit
GCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	6506	0.6497644029777706	No Hit
CTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGCT	5653	0.5645739578901533	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	2986	0.29821649358924424	No Hit
ACTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	1796	0.1793693310402822	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1738	0.17357678026058487	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCC	1502	0.15000709088112688	No Hit
CGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTG	1491	0.14890850366428773	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1424	0.14221710879808566	No Hit
GCCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTG	1187	0.11854754785346046	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACGTTA	20	7.03285E-4	45.0	37
CGGTTCA	20	7.03285E-4	45.0	43
ACCGAAC	20	7.03285E-4	45.0	33
TAACGTT	20	7.03285E-4	45.0	1
CGTTAAC	25	3.8904443E-5	45.0	6
TACGAAC	20	7.03285E-4	45.0	12
GGTATCG	20	7.03285E-4	45.0	1
TTGCGAC	20	7.03285E-4	45.0	33
GTATACG	35	1.2117198E-7	45.0	1
CCGCATA	25	3.8904443E-5	45.0	31
CTTACGG	30	2.1652213E-6	44.999996	2
TATACGG	60	3.6379788E-12	41.249996	2
TCGAAAG	50	1.0804797E-9	40.5	1
GATTACG	45	1.9279469E-8	40.0	1
TACGTTG	45	1.9279469E-8	40.0	1
CTCACTA	85	0.0	39.705883	45
CGTGTAC	125	0.0	39.6	18
TAACGAA	40	3.457626E-7	39.375	1
ACGGGTA	40	3.457626E-7	39.375	5
GTTCACG	40	3.457626E-7	39.375	1