SRR3552732_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552732_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	653800
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC	4952	0.757418170694402	No Hit
GCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC	3787	0.5792291220556746	No Hit
CTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGCT	3204	0.4900581217497706	No Hit
TCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC	1601	0.24487610890180483	No Hit
ACTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC	968	0.14805750994187825	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCC	885	0.13536249617620066	No Hit
ACCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTG	754	0.11532578770266136	No Hit
CGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTG	731	0.11180789232181096	No Hit
GCCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTG	717	0.10966656469868462	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	696	0.1064545732639951	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTCA	35	1.2108467E-7	45.000004	31
TCGCTAG	35	1.2108467E-7	45.000004	1
TCGTTCG	20	7.031052E-4	45.0	45
TAGCGTG	20	7.031052E-4	45.0	1
ACTCGCG	20	7.031052E-4	45.0	10
ACGTCAA	20	7.031052E-4	45.0	32
CACGTAG	20	7.031052E-4	45.0	1
CGTCAAG	20	7.031052E-4	45.0	33
GCGTACG	25	3.8889535E-5	45.0	1
TGCGTAG	85	0.0	42.35294	1
TATACGG	60	3.6379788E-12	41.250004	2
TGTTGCG	50	1.0804797E-9	40.5	1
TGTAGCG	50	1.0804797E-9	40.5	1
TCGAGAG	50	1.0804797E-9	40.5	1
CGGACGG	90	0.0	40.0	2
CGTTTTT	820	0.0	39.786587	1
ACACGTA	40	3.4551704E-7	39.375	1
GCGCGAG	80	0.0	39.375	1
CGCATGG	80	0.0	39.375	2
TAAACGG	40	3.4551704E-7	39.375	2