SRR3552730_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552730_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1570119
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	8778	0.5590659051957209	No Hit
GCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	6979	0.44448860245624694	No Hit
CTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT	6309	0.40181667758940565	No Hit
TCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	3286	0.20928350016782168	No Hit
ACTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	2187	0.13928880549818198	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1923	0.12247479331184451	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCC	1664	0.10597922832600586	No Hit
GCCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTG	1630	0.10381378736261393	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCGA	25	3.8914604E-5	45.0	8
CGTAAGG	230	0.0	39.130436	2
TGCGTAG	135	0.0	38.333336	1
CCATCGT	30	1.1401125E-4	37.499996	23
CCGCATA	30	1.1401125E-4	37.499996	1
TTACACG	635	0.0	36.14173	34
CGTTTTT	1900	0.0	36.118423	1
TAATACG	25	0.002107343	36.0	1
CGAATGG	125	0.0	36.0	2
CGAATAC	25	0.002107343	36.0	14
ACTAACG	25	0.002107343	36.0	1
CGACAAT	45	8.7026274E-7	35.000004	20
TCATCGA	45	8.7026274E-7	35.000004	16
CACAACG	315	0.0	35.0	12
CGCACGG	150	0.0	34.5	2
AACGAGC	340	0.0	34.411762	15
TCGAAAG	85	0.0	34.411762	1
AATACGG	125	0.0	34.199997	2
CTATCGG	40	1.5609297E-5	33.75	2
CGACAGG	200	0.0	33.75	2