SRR3552726_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552726_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1322724
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGC	4996	0.3777054018827813	No Hit
CTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGCT	3850	0.2910660122595492	No Hit
CCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGC	2281	0.17244716206857968	No Hit
TCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGC	2195	0.16594542776875598	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATTACG	20	7.033674E-4	45.0	1
CATCGCA	20	7.033674E-4	45.0	14
CGTTAGG	175	0.0	42.42857	2
TACGGGT	65	0.0	41.53846	4
TAATGCG	60	3.6379788E-12	41.250004	1
TCGGCGA	45	1.9286745E-8	40.0	24
AATTGCG	45	1.9286745E-8	40.0	1
TTAACGG	90	0.0	40.0	2
TGTTGCG	130	0.0	39.80769	1
TCGTACA	40	3.4587538E-7	39.375	34
GTACGTA	40	3.4587538E-7	39.375	8
CCCGATT	40	3.4587538E-7	39.375	42
CGACCAA	320	0.0	37.96875	29
GCGTTAG	120	0.0	37.500004	1
ATACTCG	30	1.1400149E-4	37.500004	44
CGTTAGC	30	1.1400149E-4	37.500004	45
CTCGATC	30	1.1400149E-4	37.500004	16
AAGATCG	30	1.1400149E-4	37.500004	33
GCGATAC	90	0.0	37.5	9
CACGACC	325	0.0	37.384617	27