##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552726_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1322724 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.70936642867295 31.0 31.0 34.0 30.0 34.0 2 31.868813902219966 31.0 31.0 34.0 30.0 34.0 3 31.925611843438237 33.0 31.0 34.0 30.0 34.0 4 35.544030349490896 37.0 35.0 37.0 33.0 37.0 5 35.53333272852084 37.0 35.0 37.0 33.0 37.0 6 35.55814667307768 37.0 35.0 37.0 33.0 37.0 7 35.95187658196268 37.0 35.0 37.0 35.0 37.0 8 35.975442344737075 37.0 35.0 37.0 35.0 37.0 9 37.71640569007594 39.0 37.0 39.0 35.0 39.0 10 37.08428440097859 39.0 37.0 39.0 33.0 39.0 11 36.88646459881275 39.0 37.0 39.0 33.0 39.0 12 36.77091063593009 39.0 35.0 39.0 33.0 39.0 13 36.75527623298587 39.0 35.0 39.0 33.0 39.0 14 37.84233596729174 40.0 37.0 41.0 33.0 41.0 15 37.850653651101815 40.0 37.0 41.0 33.0 41.0 16 37.850221210169316 40.0 37.0 41.0 33.0 41.0 17 37.830180748213536 40.0 37.0 41.0 33.0 41.0 18 37.8116629017089 40.0 36.0 41.0 33.0 41.0 19 37.82457413640336 40.0 37.0 41.0 33.0 41.0 20 37.74074107674768 39.0 36.0 41.0 33.0 41.0 21 37.70351713584996 39.0 36.0 41.0 33.0 41.0 22 37.69339106268579 39.0 36.0 41.0 33.0 41.0 23 37.64023409267542 39.0 36.0 41.0 33.0 41.0 24 37.657819015909595 39.0 36.0 41.0 33.0 41.0 25 37.6041214947336 39.0 36.0 41.0 32.0 41.0 26 37.54306945364264 39.0 36.0 41.0 32.0 41.0 27 37.477998433535646 39.0 36.0 41.0 32.0 41.0 28 37.45291610343503 39.0 36.0 41.0 32.0 41.0 29 37.42743610912027 39.0 36.0 41.0 32.0 41.0 30 37.33487938526858 39.0 36.0 41.0 32.0 41.0 31 37.256181939694144 39.0 36.0 41.0 32.0 41.0 32 37.18322718874081 39.0 36.0 41.0 31.0 41.0 33 37.10159640257529 39.0 35.0 41.0 31.0 41.0 34 37.01102346370067 39.0 35.0 41.0 31.0 41.0 35 36.950927782364275 39.0 35.0 41.0 31.0 41.0 36 36.88478624414466 39.0 35.0 41.0 31.0 41.0 37 36.759681535981805 39.0 35.0 40.0 31.0 41.0 38 36.71602239015849 39.0 35.0 40.0 31.0 41.0 39 36.684479150601334 39.0 35.0 40.0 30.0 41.0 40 36.55660818129859 39.0 35.0 40.0 30.0 41.0 41 36.496731744490916 39.0 35.0 40.0 30.0 41.0 42 36.42578723906121 39.0 35.0 40.0 30.0 41.0 43 36.313243730362494 38.0 35.0 40.0 30.0 41.0 44 36.22736186838675 38.0 35.0 40.0 30.0 41.0 45 36.18939400812263 38.0 35.0 40.0 30.0 41.0 46 36.06818731647721 38.0 35.0 40.0 30.0 41.0 47 35.97762798588368 38.0 35.0 40.0 29.0 41.0 48 35.88186499980343 38.0 35.0 40.0 29.0 41.0 49 35.79491715580877 38.0 34.0 40.0 29.0 41.0 50 35.66985100444235 38.0 34.0 40.0 28.0 41.0 51 34.44740626162374 37.0 33.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 7.0 9 44.0 10 80.0 11 64.0 12 38.0 13 23.0 14 25.0 15 32.0 16 66.0 17 129.0 18 289.0 19 481.0 20 866.0 21 1471.0 22 2172.0 23 3344.0 24 4929.0 25 6961.0 26 9000.0 27 11903.0 28 15151.0 29 19260.0 30 24983.0 31 32623.0 32 41937.0 33 56474.0 34 87843.0 35 105007.0 36 117470.0 37 167807.0 38 270191.0 39 342003.0 40 51.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.04645262352539 20.652985808074853 27.12289185045406 8.177669717945694 2 31.540517900937765 23.577934625817633 26.77640989352276 18.10513757972185 3 32.5850290763606 24.127935986645742 26.79394945581996 16.4930854811737 4 28.394510117000976 26.641083098212476 26.165020064654453 18.79938672013209 5 26.315013562920154 30.600866091489987 24.198547845204292 18.885572500385567 6 26.966396617888538 36.242330221573056 22.358405835230933 14.432867325307472 7 84.61583822475437 5.108624323744031 6.102180046631043 4.173357404870555 8 85.38531091898234 4.088305648041466 6.042606016069868 4.483777416906324 9 79.28479410670707 7.1661208233917275 8.30709959144916 5.241985478452043 10 38.447400969514426 34.20214647953768 14.31243403763748 13.038018513310412 11 27.648851914685153 26.818519963348365 26.73891151895634 18.793716603010154 12 26.061521526788656 24.175338165785153 29.84182641276638 19.92131389465981 13 24.96348444573471 24.736982167103644 30.914461369114036 19.385072018047605 14 20.994326858815597 28.868153900586968 28.966965141631967 21.170554098965468 15 20.24458617217197 28.12166408109326 31.4801122531987 20.153637493536067 16 23.542099485606975 27.49318829929751 28.79194752646811 20.17276468862741 17 22.890867633761843 26.014497355457372 28.390503234234803 22.704131776545978 18 23.468917173953145 26.296566781883445 29.453083182886225 20.78143286127718 19 23.1319610137867 27.84806202956928 27.935230630123897 21.084746326520122 20 24.866260837483857 27.89614462276333 27.77934021005138 19.458254329701436 21 23.986485464843764 27.755298913454357 28.622297622179683 19.6359179995222 22 22.66368494107614 25.296584926258237 27.669339937885756 24.370390194779866 23 21.009447171140767 27.820391858014222 28.57413942742401 22.596021543421003 24 22.31977343724012 26.15035336169904 28.819012885530164 22.710860315530677 25 21.282368808610112 28.25797369670468 27.126671928535355 23.332985566149855 26 20.754972314708134 28.351341625312614 28.631747817382912 22.261938242596337 27 22.019862042270343 28.26175377478597 27.969100129732276 21.749284053211404 28 19.924186754001592 27.945436840943387 28.440022257099745 23.69035414795528 29 21.128141622893363 26.46825792833577 28.440249061784623 23.96335138698625 30 23.012359343294595 27.7481167650999 27.217393802486384 22.02213008911912 31 23.547164790235907 29.004312313075136 24.78211629939428 22.666406597294674 32 22.355457374327525 29.24994178679755 25.96747318412609 22.427127654748837 33 22.971685703139887 29.24517888841512 25.048460601002176 22.734674807442822 34 22.553760270472146 26.62407274684666 27.88246074010905 22.939706242572147 35 20.672037401604566 28.250564743665347 27.306754848328147 23.77064300640194 36 22.86123182160451 30.637230442632024 25.956510957690345 20.54502677807313 37 24.05475367499191 29.055343367172593 25.556200688881432 21.333702268954067 38 22.3664952023249 29.512203604077648 24.409627405263684 23.711673788333773 39 24.087489151175905 26.374058382549947 25.870325177436865 23.66812728883728 40 23.701921186884036 26.623997145285035 28.11228948745165 21.56179218037928 41 21.98372449581319 28.27105276686595 26.672079738479077 23.073142998841785 42 23.72732331159032 27.00578503149561 27.13098121754803 22.135910439366036 43 23.71575627266157 25.71307392925508 27.591621532534376 22.979548265548974 44 22.31576655447395 26.040806698903175 26.491165201508405 25.152261545114474 45 23.14934937296065 24.983065250195807 26.41034713213036 25.45723824471318 46 23.281198496436144 26.801887619790676 26.79810754170938 23.118806342063802 47 21.532987985399828 26.951956719617996 28.835494025964604 22.679561269017572 48 22.10045330696351 25.970724051276 28.082729276855943 23.846093364904544 49 23.80783897472186 24.874350204577826 28.3434034613419 22.974407359358416 50 21.818383880537436 24.542232544355436 27.9799867546064 25.659396820500724 51 21.444912166105702 24.161654283130872 26.242284860636083 28.151148690127343 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 233.0 1 531.5 2 830.0 3 1299.0 4 1768.0 5 1380.0 6 992.0 7 1011.5 8 1031.0 9 1158.0 10 1285.0 11 1382.5 12 1480.0 13 1638.5 14 1797.0 15 1786.0 16 1775.0 17 1996.0 18 2217.0 19 2531.5 20 2846.0 21 3140.5 22 3435.0 23 4315.5 24 5196.0 25 6429.0 26 9077.0 27 10492.0 28 13101.5 29 15711.0 30 18594.5 31 21478.0 32 24935.0 33 28392.0 34 32765.5 35 37139.0 36 39967.5 37 42796.0 38 47323.0 39 51850.0 40 56371.0 41 60892.0 42 68852.0 43 76812.0 44 85119.0 45 93426.0 46 106193.5 47 118961.0 48 136469.5 49 153978.0 50 149747.5 51 145517.0 52 128066.0 53 110615.0 54 94488.5 55 78362.0 56 68603.5 57 58845.0 58 53422.5 59 48000.0 60 44967.0 61 41934.0 62 38165.0 63 34396.0 64 28301.5 65 22207.0 66 18300.0 67 14393.0 68 11697.0 69 9001.0 70 7529.5 71 6058.0 72 4860.5 73 3663.0 74 3089.5 75 1977.5 76 1439.0 77 1014.0 78 589.0 79 481.0 80 373.0 81 261.0 82 149.0 83 133.5 84 118.0 85 70.5 86 23.0 87 22.5 88 22.0 89 14.5 90 7.0 91 8.0 92 9.0 93 8.5 94 8.0 95 7.0 96 6.0 97 3.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1322724.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.51093042776003 #Duplication Level Percentage of deduplicated Percentage of total 1 67.4417802062736 19.902696835916238 2 13.124991912638158 7.746614463975557 3 5.324265315491504 4.713720699132168 4 2.708555444432362 3.1972796512149633 5 1.6328328076485539 2.4093207693340277 6 1.0894800547204198 1.92909420583719 7 0.7967040525617178 1.6458034506664325 8 0.6298931575766843 1.4870986520134093 9 0.4816586222840361 1.2792774682939443 >10 6.2339202053037805 42.0184803009106 >50 0.4698046316909621 8.559408205652536 >100 0.06199756829108999 3.4151378480384 >500 0.002572513179492877 0.49930780234408256 >1k 0.0015435079076957263 1.1967596466705364 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGC 4996 0.3777054018827813 No Hit CTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGCT 3850 0.2910660122595492 No Hit CCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGC 2281 0.17244716206857968 No Hit TCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGC 2195 0.16594542776875598 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.5120312325171388E-4 0.0 0.0 0.33869499608383913 0.0 2 1.5120312325171388E-4 0.0 0.0 1.2840925242151802 0.0 3 1.5120312325171388E-4 0.0 0.0 1.7488909250909488 0.0 4 1.5120312325171388E-4 0.0 0.0 2.297229051563289 0.0 5 1.5120312325171388E-4 0.0 0.0 3.7737275501162753 0.0 6 1.5120312325171388E-4 0.0 0.0 4.5083479244347275 0.0 7 1.5120312325171388E-4 0.0 0.0 5.356597445876842 0.0 8 1.5120312325171388E-4 0.0 0.0 6.8201680773918065 0.0 9 1.5120312325171388E-4 0.0 0.0 7.318306766944578 0.0 10 1.5120312325171388E-4 0.0 0.0 8.695011204151433 0.0 11 1.5120312325171388E-4 0.0 0.0 10.76891324267194 0.0 12 1.5120312325171388E-4 0.0 0.0 12.264992545686024 0.0 13 1.5120312325171388E-4 0.0 0.0 12.858691609133878 0.0 14 1.5120312325171388E-4 0.0 0.0 13.087235129928844 0.0 15 1.5120312325171388E-4 0.0 0.0 13.558535265104435 0.0 16 1.5120312325171388E-4 0.0 0.0 14.596469104665825 0.0 17 1.5120312325171388E-4 0.0 0.0 15.955104768644102 0.0 18 1.5120312325171388E-4 0.0 0.0 17.352297229051562 0.0 19 1.5120312325171388E-4 0.0 0.0 18.23721350788222 0.0 20 1.5120312325171388E-4 0.0 0.0 19.058246467139025 0.0 21 4.5360936975514165E-4 0.0 0.0 20.085520486511168 0.0 22 4.5360936975514165E-4 0.0 0.0 21.21009371569579 0.0 23 6.048124930068555E-4 0.0 0.0 22.28454310952247 0.0 24 7.560156162585694E-4 0.0 0.0 23.145569294879355 0.0 25 0.0011340234243878541 0.0 0.0 23.8795848567048 0.0 26 0.0011340234243878541 0.0 0.0 24.577840879881215 0.0 27 0.0011340234243878541 0.0 0.0 25.272090020291458 0.0 28 0.0011340234243878541 0.0 0.0 25.985163949546543 0.0 29 0.0011340234243878541 0.0 0.0 26.722657183206778 0.0 30 0.0011340234243878541 0.0 0.0 27.558432446980625 0.0 31 0.0011340234243878541 0.0 0.0 28.294338047846715 0.0 32 0.0011340234243878541 0.0 0.0 29.022834695673474 0.0 33 0.0015876327941429958 0.0 0.0 29.707104429949105 0.0 34 0.0016632343557688527 0.0 0.0 30.4301577653388 0.0 35 0.0020412421638981377 0.0 0.0 31.166138967766518 0.0 36 0.0021168437255239944 0.0 0.0 31.88246376417151 0.0 37 0.0021168437255239944 0.0 0.0 32.59591570123472 0.0 38 0.0021168437255239944 0.0 0.0 33.33068727867643 0.0 39 0.0021168437255239944 0.0 0.0 34.068482918583165 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATTACG 20 7.033674E-4 45.0 1 CATCGCA 20 7.033674E-4 45.0 14 CGTTAGG 175 0.0 42.42857 2 TACGGGT 65 0.0 41.53846 4 TAATGCG 60 3.6379788E-12 41.250004 1 TCGGCGA 45 1.9286745E-8 40.0 24 AATTGCG 45 1.9286745E-8 40.0 1 TTAACGG 90 0.0 40.0 2 TGTTGCG 130 0.0 39.80769 1 TCGTACA 40 3.4587538E-7 39.375 34 GTACGTA 40 3.4587538E-7 39.375 8 CCCGATT 40 3.4587538E-7 39.375 42 CGACCAA 320 0.0 37.96875 29 GCGTTAG 120 0.0 37.500004 1 ATACTCG 30 1.1400149E-4 37.500004 44 CGTTAGC 30 1.1400149E-4 37.500004 45 CTCGATC 30 1.1400149E-4 37.500004 16 AAGATCG 30 1.1400149E-4 37.500004 33 GCGATAC 90 0.0 37.5 9 CACGACC 325 0.0 37.384617 27 >>END_MODULE