SRR3552719_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552719_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	915600
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCTGC	3963	0.43283093053735255	Illumina PCR Primer Index 6 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCTGCT	3649	0.3985364788117082	Illumina PCR Primer Index 6 (95% over 24bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2523	0.27555701179554387	No Hit
CCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCTGC	2138	0.23350808213193536	Illumina PCR Primer Index 6 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCTGC	1783	0.19473569244211447	Illumina PCR Primer Index 6 (95% over 23bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCC	1445	0.15782000873743993	No Hit
ACTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCTGC	1214	0.1325906509392748	Illumina PCR Primer Index 6 (95% over 23bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	974	0.10637833114897335	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATCAT	35	1.2115743E-7	45.0	10
CAGACGA	20	7.0325343E-4	45.0	24
CGTTGAT	60	0.0	44.999996	25
GCCGATA	30	2.1650158E-6	44.999996	9
CCCTCGT	95	0.0	40.263157	14
CGTTAGG	95	0.0	40.263157	2
CGACCAA	180	0.0	40.0	29
GCGAGAC	205	0.0	39.512196	21
CCGATAT	40	3.4571895E-7	39.375	11
GTGTACG	40	3.4571895E-7	39.375	1
CGTTTGG	80	0.0	39.375	2
GGCCTAT	80	0.0	39.375	8
GTACGAG	40	3.4571895E-7	39.375	1
CACGACC	190	0.0	39.078945	27
CGTTTTT	1800	0.0	38.75	1
CCTTCGA	35	6.246897E-6	38.571426	20
ATTTACG	35	6.246897E-6	38.571426	1
TATCGAG	35	6.246897E-6	38.571426	1
CTTACGA	35	6.246897E-6	38.571426	16
CCTCGTG	100	0.0	38.25	15