##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552718_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 316641 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.906888242520708 33.0 31.0 34.0 30.0 34.0 2 32.036659813479616 33.0 31.0 34.0 30.0 34.0 3 32.06593902874233 33.0 31.0 34.0 30.0 34.0 4 35.71722234328467 37.0 35.0 37.0 33.0 37.0 5 35.59799583755736 37.0 35.0 37.0 33.0 37.0 6 35.53706879399699 37.0 35.0 37.0 33.0 37.0 7 35.78707432076074 37.0 35.0 37.0 35.0 37.0 8 35.58912459220379 37.0 35.0 37.0 35.0 37.0 9 37.42371644859636 39.0 37.0 39.0 35.0 39.0 10 37.01856992619402 39.0 37.0 39.0 33.0 39.0 11 36.899908729444384 39.0 37.0 39.0 33.0 39.0 12 36.75417270662991 39.0 35.0 39.0 33.0 39.0 13 36.60138137512198 39.0 35.0 39.0 32.0 39.0 14 37.78024639891865 40.0 36.0 41.0 33.0 41.0 15 37.95506898980233 40.0 37.0 41.0 33.0 41.0 16 37.999447323625176 40.0 37.0 41.0 33.0 41.0 17 37.926152961871644 40.0 36.0 41.0 33.0 41.0 18 37.93750651368585 40.0 36.0 41.0 33.0 41.0 19 37.89770434024653 40.0 36.0 41.0 33.0 41.0 20 37.779494759048895 40.0 36.0 41.0 33.0 41.0 21 37.624982235402236 40.0 35.0 41.0 33.0 41.0 22 37.65134331940589 40.0 35.0 41.0 33.0 41.0 23 33.60774504880922 39.0 35.0 41.0 0.0 41.0 24 35.241911186485645 39.0 35.0 41.0 17.0 41.0 25 36.329186681446814 39.0 35.0 41.0 29.0 41.0 26 36.894053518021984 39.0 35.0 41.0 31.0 41.0 27 30.789199756190765 38.0 32.0 41.0 0.0 41.0 28 33.298568410281675 38.0 31.0 40.0 16.0 41.0 29 35.2643940614134 38.0 32.0 40.0 25.0 41.0 30 36.24666420330911 38.0 35.0 40.0 30.0 41.0 31 36.641000375819935 38.0 35.0 40.0 31.0 41.0 32 35.14831623194722 38.0 35.0 40.0 26.0 41.0 33 35.78907343016223 39.0 35.0 40.0 27.0 41.0 34 36.231372437555464 39.0 35.0 41.0 30.0 41.0 35 36.37825802722958 39.0 35.0 41.0 30.0 41.0 36 36.40747407947802 39.0 35.0 40.0 30.0 41.0 37 36.431674988393794 39.0 35.0 41.0 30.0 41.0 38 36.35248751740931 39.0 35.0 41.0 30.0 41.0 39 36.27360954519472 39.0 35.0 41.0 30.0 41.0 40 36.20521347519746 38.0 35.0 40.0 30.0 41.0 41 36.12328157124314 38.0 35.0 40.0 30.0 41.0 42 36.060443846501244 38.0 35.0 40.0 30.0 41.0 43 36.02936764348268 38.0 35.0 40.0 30.0 41.0 44 35.92967114176623 38.0 35.0 40.0 30.0 41.0 45 35.8519743179184 38.0 35.0 40.0 30.0 41.0 46 35.723510221354786 38.0 35.0 40.0 29.0 41.0 47 35.64454066276951 38.0 34.0 40.0 29.0 41.0 48 35.588202412195514 37.0 34.0 40.0 29.0 41.0 49 35.55175103666297 37.0 34.0 40.0 29.0 41.0 50 35.40820992859421 37.0 34.0 40.0 29.0 41.0 51 34.71090288370742 36.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 5.0 9 24.0 10 38.0 11 29.0 12 20.0 13 21.0 14 25.0 15 40.0 16 61.0 17 73.0 18 142.0 19 263.0 20 446.0 21 703.0 22 1069.0 23 1433.0 24 1922.0 25 2384.0 26 3138.0 27 3752.0 28 4605.0 29 5789.0 30 7667.0 31 9586.0 32 12446.0 33 17207.0 34 26034.0 35 30373.0 36 28810.0 37 36733.0 38 50752.0 39 71013.0 40 38.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.679937215963825 18.693409886906622 22.77531968380595 13.851333213323604 2 30.314772881591455 26.25970736575491 25.033397443792815 18.392122308860824 3 32.37230807128578 24.180380936139034 26.568890320583876 16.87842067199131 4 29.50818118942272 25.44648355708831 26.271708338465327 18.773626915023637 5 25.086770190847048 30.67259135740476 24.458298198906647 19.782340252841546 6 25.639762380740333 36.67023537697266 23.831405282322883 13.858596959964123 7 81.78599739136752 6.667487785852116 7.578930081701358 3.9675847410790137 8 83.835005574136 5.8242615454094695 6.514949106401256 3.8257837740532654 9 78.48667734121608 7.723257569297721 7.858742234896934 5.931322854589267 10 43.14033874324551 25.958419787709108 15.281975486434163 15.619265982611221 11 32.754760122662574 26.975344317381516 21.735656468998013 18.5342390909579 12 28.543681961590572 24.25270258747288 27.2741053748567 19.92951007607985 13 24.36450112272258 26.28749909203167 28.596107263430824 20.751892521814927 14 21.326360136558435 29.404278030956192 27.63981922745317 21.6295426050322 15 21.275829725146146 26.127380850868963 30.85955387963024 21.737235544354647 16 23.81845686439848 24.009524982551216 29.998641995193292 22.173376157857007 17 23.42052987452667 25.34100132326515 27.185361339813856 24.053107462394323 18 24.427032506845293 25.55354486626811 27.782883454764228 22.23653917212237 19 26.166226104642163 24.95886508695968 25.948629520497978 22.92627928790018 20 27.01197886565543 23.74392450756535 26.490568182894826 22.7535284438844 21 25.678607634513533 26.195912721346886 26.215177440697822 21.910302203441752 22 25.268995487002634 24.589677268578612 26.021582801974475 24.119744442444283 23 21.79566133255011 34.58301357057362 23.20640725616708 20.414917840709194 24 22.824271019861612 26.49625285417871 28.86423425898731 21.815241866972375 25 23.454953717301297 27.254840655505763 26.849649918993435 22.440555708199504 26 22.78826810173035 27.459488821725554 26.021898617045803 23.730344459498294 27 19.68317432044492 40.11546199007709 21.91346035415502 18.28790333532297 28 22.08115815702957 27.774988077981057 28.81307221743236 21.330781547557013 29 23.184931831316856 26.48235699104033 27.330636272624204 23.002074905018617 30 22.866590239419406 28.151755458073968 26.757747733237323 22.2239065692693 31 25.945155554713384 27.422222643308984 23.818141049327156 22.81448075265048 32 24.39924078056853 30.97482638066454 23.747714288421275 20.878218550345657 33 24.15069431943431 28.320400706162502 23.796349809405605 23.732555164997585 34 23.420214059455347 27.178413408244666 25.16414488332212 24.237227648977864 35 23.575595074548147 27.04956085914332 26.200965762488117 23.173878303820413 36 24.6954753174731 29.63798118373805 23.903095303514075 21.763448195274776 37 23.841195549534014 28.619477578709013 24.339867547159084 23.19945932459789 38 23.734450055425548 29.200577309950386 24.827801832359047 22.237170802265023 39 24.018683619619697 27.324004156126342 25.593653380326614 23.06365884392735 40 24.29565343717333 26.78648690472807 26.58404944400757 22.333810214091038 41 22.03315426618789 26.98387132430734 26.333608092445388 24.649366317059382 42 22.326862282521848 27.320846005413067 26.116011508301202 24.236280203763886 43 23.19409046838533 25.871254828022906 26.626368663565366 24.308286040026402 44 23.33810214091037 26.71227036296626 26.475409059471133 23.474218436652233 45 24.435559513771114 27.178729223315994 24.90201837412085 23.48369288879204 46 24.25365003268686 28.480203132253877 24.97181350488408 22.294333330175185 47 23.571805293692226 27.551706822552983 26.750799801668133 22.125688082086654 48 22.91680483576037 28.125226992082514 26.02316187733111 22.934806294826 49 22.954386829248268 27.65182020016359 27.019242612295947 22.374550358292197 50 22.278858391680167 27.263683477502916 27.580761809115057 22.876696321701864 51 21.793766442122152 27.251682504792495 26.30139495517005 24.653156097915303 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 662.0 1 872.0 2 1082.0 3 1314.0 4 1546.0 5 1150.0 6 754.0 7 768.5 8 783.0 9 823.5 10 864.0 11 784.0 12 704.0 13 728.5 14 753.0 15 748.0 16 743.0 17 808.0 18 873.0 19 863.0 20 853.0 21 973.0 22 1093.0 23 1250.0 24 1407.0 25 1838.5 26 2700.0 27 3130.0 28 3475.0 29 3820.0 30 4552.0 31 5284.0 32 6220.0 33 7156.0 34 8153.5 35 9151.0 36 9449.0 37 9747.0 38 10294.0 39 10841.0 40 12200.0 41 13559.0 42 15061.0 43 16563.0 44 17975.5 45 19388.0 46 21621.0 47 23854.0 48 23514.0 49 23174.0 50 22306.0 51 21438.0 52 21623.0 53 21808.0 54 20413.5 55 19019.0 56 17990.5 57 16962.0 58 16559.5 59 16157.0 60 15289.0 61 14421.0 62 13414.5 63 12408.0 64 11046.5 65 9685.0 66 8416.5 67 7148.0 68 6365.5 69 5583.0 70 4845.0 71 4107.0 72 3649.0 73 3191.0 74 2725.5 75 1677.5 76 1095.0 77 884.0 78 673.0 79 544.5 80 416.0 81 281.5 82 147.0 83 92.0 84 37.0 85 31.0 86 25.0 87 15.0 88 5.0 89 3.5 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 316641.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.666088725086137 #Duplication Level Percentage of deduplicated Percentage of total 1 71.42705062010965 21.189612210673918 2 9.427795816255921 5.593716543340881 3 3.9463458774684623 3.512179408225719 4 2.1546814286474687 2.556838817462047 5 1.41587267791558 2.100170224323445 6 0.9964337041571298 1.773617440571499 7 0.7899079150476394 1.640343480471575 8 0.6940969819556075 1.6472914120407653 9 0.5514451482408048 1.4723298625256995 >10 8.361100761164634 52.88670765946293 >50 0.19481556395379784 3.46322807217006 >100 0.03832437323681269 1.7976193859923384 >500 0.0021291318464895935 0.36634548273912726 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 626 0.197700234650598 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 534 0.16864524808852926 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 342 0.10800875439377718 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 335 0.10579804889448935 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.049582966198312914 0.0 2 0.0 0.0 0.0 0.19706860450794433 0.0 3 0.0 0.0 0.0 0.2498097214195256 0.0 4 0.0 0.0 0.0 0.3170783316121412 0.0 5 0.0 0.0 0.0 0.5463600733954226 0.0 6 0.0 0.0 0.0 0.7405863422614254 0.0 7 0.0 0.0 0.0 0.9174427822044524 0.0 8 0.0 0.0 0.0 1.2383108946725156 0.0 9 0.0 0.0 0.0 1.3674792588451905 0.0 10 0.0 0.0 0.0 1.7568792417911767 0.0 11 0.0 0.0 0.0 2.1737551359425975 0.0 12 0.0 0.0 0.0 2.558102077747354 0.0 13 0.0 0.0 0.0 2.6717955034250145 0.0 14 0.0 0.0 0.0 2.72011520933802 0.0 15 0.0 0.0 0.0 2.8069643539528992 0.0 16 0.0 0.0 0.0 2.9828733486819456 0.0 17 0.0 0.0 0.0 3.176467987405295 0.0 18 0.0 0.0 0.0 3.432594010251357 0.0 19 0.0 0.0 0.0 3.5611307442813787 0.0 20 0.0 0.0 0.0 3.6773506905296536 0.0 21 0.0 0.0 0.0 3.807150684844982 0.0 22 0.0 0.0 0.0 3.9378981243742914 0.0 23 0.0 0.0 0.0 4.076225125615444 0.0 24 0.0 0.0 0.0 4.206340935002101 0.0 25 0.0 0.0 0.0 4.303611976970765 0.0 26 0.0 0.0 0.0 4.416673772505772 0.0 27 0.0 0.0 0.0 4.521208561114953 0.0 28 0.0 0.0 0.0 4.653535076000897 0.0 29 0.0 0.0 0.0 4.792177892313377 0.0 30 0.0 0.0 0.0 4.9642971061865016 0.0 31 0.0 0.0 0.0 5.113361819852767 0.0 32 0.0 0.0 0.0 5.26463723901832 0.0 33 0.0 0.0 0.0 5.4203340691824495 0.0 34 0.0 0.0 0.0 5.582347200773115 0.0 35 0.0 0.0 0.0 5.774678579211157 0.0 36 0.0 0.0 0.0 5.949640128726223 0.0 37 0.0 0.0 0.0 6.118285376814752 0.0 38 0.0 0.0 0.0 6.30208974832697 0.0 39 0.0 0.0 0.0 6.463787064846309 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTAC 25 3.8843827E-5 45.0 6 CCGATTG 20 7.0255366E-4 45.0 11 CCGCTAA 25 3.8843827E-5 45.0 19 ATCAATT 25 3.8843827E-5 45.0 11 CCCACCG 20 7.0255366E-4 45.0 24 TAGTTAG 20 7.0255366E-4 45.0 1 TCGGAGA 20 7.0255366E-4 45.0 45 AATTGTC 20 7.0255366E-4 45.0 19 TGCGACG 25 3.8843827E-5 45.0 1 CCATAGT 20 7.0255366E-4 45.0 44 CGAATAT 70 0.0 45.0 14 AGCGACG 20 7.0255366E-4 45.0 23 CTCGAAA 20 7.0255366E-4 45.0 19 TAGGACG 25 3.8843827E-5 45.0 1 TAGTGCG 25 3.8843827E-5 45.0 1 TCGTTAG 30 2.1605028E-6 44.999996 1 ACGCATT 30 2.1605028E-6 44.999996 17 CGCATGG 30 2.1605028E-6 44.999996 2 TCGTGTA 60 0.0 44.999996 17 GCGATAT 30 2.1605028E-6 44.999996 9 >>END_MODULE