SRR3552717_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552717_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	924926
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTCTGC	1909	0.20639488996957597	TruSeq Adapter, Index 13 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTCTGC	1798	0.1943939298927698	TruSeq Adapter, Index 13 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1537	0.16617545619865806	No Hit
CTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTCTGCT	1338	0.14466022146636595	TruSeq Adapter, Index 16 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1212	0.13103751002782926	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1056	0.11417129586583143	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	930	0.10054858442729474	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGATCA	85	0.0	45.0	9
ACGTCAA	20	7.0325716E-4	45.0	3
TATAACG	25	3.890213E-5	45.0	1
GGTAGTA	25	3.890213E-5	45.0	7
GTACGTC	20	7.0325716E-4	45.0	1
ATCGACT	20	7.0325716E-4	45.0	32
ACGTTAG	30	2.1650412E-6	44.999996	1
ACGCATT	85	0.0	42.35294	17
ACGGGTC	60	3.6379788E-12	41.249996	5
CGTTAGG	160	0.0	40.78125	2
CGCTCGT	50	1.0804797E-9	40.5	13
TAGGGCG	245	0.0	40.408165	5
TCGTTAG	45	1.927583E-8	40.000004	1
CGATCAA	45	1.927583E-8	40.000004	10
CTAGACG	40	3.457244E-7	39.375	1
TAGAACG	40	3.457244E-7	39.375	1
TACGAAT	200	0.0	39.375	12
CACGTAG	40	3.457244E-7	39.375	1
ATGACGC	110	0.0	38.863636	27
TACGCAT	105	0.0	38.57143	16