SRR3552715_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552715_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	637796
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTGC	2503	0.39244523327208075	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2476	0.38821190474697237	No Hit
GCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTGC	2289	0.35889218496196273	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1850	0.29006139894260863	No Hit
CTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTGCT	1676	0.262779948447466	Illumina Single End Adapter 2 (95% over 21bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1034	0.16212080351711206	No Hit
GTTGCGGGGGTTCGCCATGTTTTGCTGTGATGTTACATAGATAGATTTGTA	829	0.12997886471536355	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	675	0.10583321312770855	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATTTCG	20	7.0309214E-4	45.000004	1
TAAACGG	30	2.1639753E-6	45.000004	2
CACGACA	20	7.0309214E-4	45.000004	22
TCTAGCG	35	1.2107921E-7	45.000004	1
TATAGCG	35	1.2107921E-7	45.000004	1
ACCGTTA	20	7.0309214E-4	45.000004	25
GCTACGA	70	0.0	45.000004	10
TACCGGC	20	7.0309214E-4	45.000004	3
TCGTTTA	50	2.1827873E-11	44.999996	38
CGAGTCA	25	3.888847E-5	44.999996	21
CTACGAA	65	0.0	44.999996	11
CGCTACA	100	0.0	44.999996	28
CGAATAT	65	0.0	44.999996	14
TTCGGAC	25	3.888847E-5	44.999996	13
GTACGCG	25	3.888847E-5	44.999996	1
TAACGCA	150	0.0	43.5	26
GGTAGGC	70	0.0	41.785717	8
ATAACGC	60	3.6379788E-12	41.250004	11
ACGCATT	105	0.0	40.714287	17
CGTAGTG	45	1.925946E-8	40.0	28