SRR3552708_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552708_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1116654
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC	2224	0.19916643830586736	Illumina PCR Primer Index 5 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC	2041	0.18277819270785758	Illumina PCR Primer Index 5 (95% over 23bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1540	0.1379120121362571	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1407	0.12600142926994395	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1399	0.1252850032328725	No Hit
CTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGCT	1368	0.12250885233922057	Illumina PCR Primer Index 5 (95% over 24bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1323	0.11847895588069357	No Hit
TATATATATATATATATATATATATATATATATATATATATATATATATAT	1175	0.10522507419487147	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACGTAA	25	3.8907332E-5	45.000004	4
CACCCGT	25	3.8907332E-5	45.000004	14
TGTTTCG	20	7.0332E-4	45.0	1
CGCGAAA	20	7.0332E-4	45.0	28
ATAATCG	30	2.1654469E-6	44.999996	12
ACGGGTA	170	0.0	42.35294	5
TACGGGT	115	0.0	41.08696	4
ACGTTAG	55	6.184564E-11	40.909092	27
TCGATAG	45	1.9283107E-8	40.0	1
TCGTTGA	80	0.0	39.375	24
ATCTCGA	35	6.2481286E-6	38.57143	29
ATGGTCG	65	9.094947E-12	38.07692	44
TATACGG	65	9.094947E-12	38.07692	2
CTACGAA	320	0.0	37.96875	11
ATTAGCG	60	1.5643309E-10	37.499996	1
CACCGTA	30	1.1399011E-4	37.499996	25
TACGAAT	325	0.0	37.384617	12
ATATCAC	205	0.0	37.317074	30
TAGGGTA	350	0.0	37.285717	5
ACGGGCC	195	0.0	36.923077	5