SRR3552707_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552707_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	975118
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1320	0.1353682323575198	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1257	0.12890747581318363	No Hit
GCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTTCTGC	1237	0.12685644198958484	TruSeq Adapter, Index 27 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1068	0.10952520618017511	No Hit
CCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTTCTGC	980	0.10050065735634046	TruSeq Adapter, Index 27 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTTA	35	1.2116652E-7	45.000004	38
ATACCGG	30	2.1651613E-6	45.000004	2
CGACACT	20	7.0327614E-4	45.0	43
CCGTACG	20	7.0327614E-4	45.0	1
ACGGAAC	20	7.0327614E-4	45.0	13
TGCGTAA	20	7.0327614E-4	45.0	1
GCTACGA	200	0.0	43.875	10
AGCTACG	225	0.0	39.0	9
CGAATAT	215	0.0	38.720932	14
TAAACGG	105	0.0	38.57143	2
ATCGGCC	35	6.2473136E-6	38.57143	13
CCCTCGT	135	0.0	38.333336	14
CTAACGC	130	0.0	38.07692	25
CGTTTAG	30	1.1397948E-4	37.500004	14
CCGTTTA	30	1.1397948E-4	37.500004	13
TACGGGT	90	0.0	37.5	4
CGAGGGA	300	0.0	37.5	4
ATAGGGT	290	0.0	37.241383	4
TACGAAT	230	0.0	37.173916	12
TTAACGG	55	2.748493E-9	36.81818	2