SRR3552701_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552701_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	379569
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1546	0.4073040738311084	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGC	1541	0.40598679028055507	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1406	0.3704201344156135	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCG	1270	0.3345900218405613	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTC	1225	0.32273446988558074	RNA PCR Primer, Index 38 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCTGC	913	0.24053597633104917	RNA PCR Primer, Index 27 (95% over 23bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	872	0.22973425121651136	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	635	0.16729501092028065	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	449	0.1182920628396945	No Hit
CCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCTGC	400	0.10538268404427127	RNA PCR Primer, Index 38 (96% over 25bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAGCTATGT	394	0.10380194378360719	No Hit
TATATATATATATATATATATATATATATATATATATATATATATATATAT	391	0.10301157365327515	No Hit
CTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCTGCT	385	0.1014308333926111	RNA PCR Primer, Index 38 (96% over 26bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGGAT	25	3.8858525E-5	45.0	27
AATCCGA	25	3.8858525E-5	45.0	34
GGTACGA	35	1.2090459E-7	45.0	9
CGAGTTA	40	6.7939254E-9	45.0	18
ACGCATT	50	2.1827873E-11	45.0	17
CGTGCGG	25	3.8858525E-5	45.0	2
TTAGCAG	20	7.0273096E-4	45.0	1
CGTTGCC	20	7.0273096E-4	45.0	33
ATTACGG	20	7.0273096E-4	45.0	2
CCGTAGA	35	1.2090459E-7	45.0	27
CGCTCGT	35	1.2090459E-7	45.0	13
TCGTGAC	20	7.0273096E-4	45.0	35
TGACCGC	20	7.0273096E-4	45.0	38
CGTAGAC	20	7.0273096E-4	45.0	28
GCTTAAG	20	7.0273096E-4	45.0	1
TCCACGT	20	7.0273096E-4	45.0	13
TTCGGTG	20	7.0273096E-4	45.0	1
CGTAAGC	20	7.0273096E-4	45.0	43
CGTCGAA	20	7.0273096E-4	45.0	42
GCGGACT	20	7.0273096E-4	45.0	13