SRR3552699_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552699_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	773542
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2083	0.2692807888905838	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGC	1950	0.2520871523459618	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTC	1366	0.1765902821049148	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCG	1331	0.17206564090896165	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1237	0.15991374741125886	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAAGC	55	1.8189894E-12	45.000004	43
TTAGGCG	50	2.1827873E-11	45.0	1
TCGTATA	20	7.0318556E-4	45.0	40
TCGTACT	20	7.0318556E-4	45.0	25
ATGCGAT	20	7.0318556E-4	45.0	13
CCGCGTA	40	6.8102963E-9	45.0	40
CGGTATC	20	7.0318556E-4	45.0	42
CGATCGC	25	3.8896185E-5	45.0	34
GTATGCG	65	0.0	44.999996	1
TAATACG	185	0.0	42.567566	26
GTCGAAT	275	0.0	42.545456	43
TATTGCG	90	0.0	42.5	1
CGGGCTA	85	0.0	42.352943	6
CGAATAT	175	0.0	41.142857	14
GGTCGAA	290	0.0	41.120693	42
CGTGTAC	115	0.0	41.086956	18
TTAACGG	55	6.002665E-11	40.909092	2
GATGAAT	1730	0.0	40.70809	20
TCGTTTA	50	1.0804797E-9	40.5	38
CCGATGA	1600	0.0	40.5	18