SRR3552698_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552698_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	661975
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1906	0.28792628120397296	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1472	0.2223648929340232	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	720	0.108765436761207	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGC	665	0.10045696589750368	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAGTTA	20	7.031117E-4	45.0	21
TCTAGCG	20	7.031117E-4	45.0	1
AACGCGT	45	3.8380676E-10	45.0	27
TATAGCG	20	7.031117E-4	45.0	1
CGATCGA	20	7.031117E-4	45.0	41
ATCGCTA	20	7.031117E-4	45.0	29
GTTATTC	20	7.031117E-4	45.0	27
GTACGAC	20	7.031117E-4	45.0	7
GTTCACG	30	2.1641008E-6	44.999996	1
TACGCGG	55	6.002665E-11	40.90909	2
ACGGGTA	40	3.4552613E-7	39.375	5
TCGAAAG	40	3.4552613E-7	39.375	1
TACGAAT	95	0.0	37.894737	12
CATACGA	95	0.0	37.894737	18
TTACGGG	190	0.0	37.894737	3
AACGACC	30	1.13939896E-4	37.499996	27
TCCCGAT	30	1.13939896E-4	37.499996	39
TCGACGG	30	1.13939896E-4	37.499996	2
TAATGCG	30	1.13939896E-4	37.499996	1
ATAATAC	110	0.0	36.81818	25