SRR3552697_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552697_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	641778
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGC	1993	0.3105435212799441	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTC	1717	0.267537996004849	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCG	1608	0.2505539298635977	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1291	0.20115990264546307	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	886	0.13805396881787785	No Hit
GCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGC	883	0.13758651745619202	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTACGT	30	2.1639971E-6	45.000004	45
CGGGCTA	30	2.1639971E-6	45.000004	6
CGATCGA	30	2.1639971E-6	45.000004	41
TCTAGCG	20	7.030955E-4	45.0	1
CGGTATC	20	7.030955E-4	45.0	36
TGTACCG	20	7.030955E-4	45.0	1
TTCGAAG	25	3.8888735E-5	45.0	1
TAGTCGA	20	7.030955E-4	45.0	28
TGCGTCG	20	7.030955E-4	45.0	1
TATAGCG	55	1.8189894E-12	44.999996	1
TAATACG	140	0.0	43.392857	26
CGGGTAC	120	0.0	43.125004	6
TACGAAT	90	0.0	42.499996	12
CGTTAGG	120	0.0	41.250004	2
GCTACGA	95	0.0	40.263157	10
ATAGCGG	90	0.0	39.999996	2
CGATGAA	600	0.0	39.75	19
TCGTTCA	80	0.0	39.375	16
CCAATCG	80	0.0	39.375	40
CAATCGA	80	0.0	39.375	41