SRR3552696_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552696_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	358877
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2235	0.6227760486183289	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1362	0.379517216204995	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1199	0.334097754941108	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGC	912	0.25412606547647243	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCG	845	0.23545671636800353	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	771	0.21483683824820204	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTC	727	0.2025763701769687	Illumina PCR Primer Index 7 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGC	558	0.15548502690336802	Illumina PCR Primer Index 7 (96% over 27bp)
CTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGCT	504	0.1404380888159453	Illumina PCR Primer Index 7 (96% over 28bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCC	372	0.10365668460224534	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	371	0.10337803760062642	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCATT	135	0.0	45.000004	17
ACAACGC	25	3.8854254E-5	45.0	39
CGGGTCG	20	7.0267956E-4	45.0	17
TCGCAAT	20	7.0267956E-4	45.0	22
CGAACCA	25	3.8854254E-5	45.0	15
CTCGTGC	20	7.0267956E-4	45.0	45
CCGATTT	20	7.0267956E-4	45.0	11
TACCAAC	20	7.0267956E-4	45.0	44
GGCCGTA	25	3.8854254E-5	45.0	42
GGCAACC	20	7.0267956E-4	45.0	29
TTCACGG	35	1.2088094E-7	45.0	2
ATTCGCT	20	7.0267956E-4	45.0	32
CGATTGT	20	7.0267956E-4	45.0	13
TACGGGT	25	3.8854254E-5	45.0	4
TAACGCC	20	7.0267956E-4	45.0	12
TCTACGA	25	3.8854254E-5	45.0	22
GTGCTCG	20	7.0267956E-4	45.0	33
CGTAGTG	25	3.8854254E-5	45.0	28
AGATTCG	20	7.0267956E-4	45.0	30
ATGACCG	20	7.0267956E-4	45.0	15