SRR3552695_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552695_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1171826
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTGC	3021	0.2578027795935574	Illumina PCR Primer Index 10 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTGC	2614	0.22307066066122447	Illumina PCR Primer Index 10 (95% over 23bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2046	0.1745993005787549	No Hit
CTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTGCT	1901	0.16222544985347653	Illumina PCR Primer Index 10 (95% over 24bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1804	0.1539477704027731	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGCG	35	1.2119563E-7	45.0	1
ATATGCG	35	1.2119563E-7	45.0	1
CCGTATG	20	7.033343E-4	45.0	1
TACGTCC	20	7.033343E-4	45.0	28
TTCTACG	30	2.1655396E-6	44.999996	1
ACGTCGT	30	2.1655396E-6	44.999996	26
TAGACGT	70	0.0	41.785713	26
CGTAGTC	65	0.0	41.538464	30
TTCGTAG	50	1.0822987E-9	40.500004	1
TAGTACG	45	1.9283107E-8	40.0	1
TTGGACG	80	0.0	39.375	1
TAACGCG	40	3.458299E-7	39.375	1
TCGACGT	40	3.458299E-7	39.375	26
TCGTAGG	130	0.0	38.076927	2
CTAACGC	255	0.0	37.941177	25
TAACGTT	30	1.1399357E-4	37.499996	38
TCGCTAA	30	1.1399357E-4	37.499996	19
CATCGAT	30	1.1399357E-4	37.499996	16
TTACGAC	30	1.1399357E-4	37.499996	14
TGTCGAC	30	1.1399357E-4	37.499996	12