SRR3552694_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552694_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	533509
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1114	0.20880622444982183	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1092	0.20468258267433165	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	832	0.1559486344185384	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	691	0.12951983940289669	No Hit
GCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC	594	0.11133832793823535	TruSeq Adapter, Index 23 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGAT	20	7.0298824E-4	45.000004	32
CGAAATT	20	7.0298824E-4	45.000004	44
GATCAGC	20	7.0298824E-4	45.000004	9
TAACGCA	35	1.2102828E-7	45.000004	26
GTTAACG	20	7.0298824E-4	45.000004	1
AATTGCG	35	1.2102828E-7	45.000004	1
GTATGCG	20	7.0298824E-4	45.000004	1
CCGAAAT	20	7.0298824E-4	45.000004	43
TTCGCAT	20	7.0298824E-4	45.000004	25
ATTCTCG	20	7.0298824E-4	45.000004	30
CTCGCGG	25	3.8879858E-5	45.0	2
ATAGTAG	30	2.1633077E-6	44.999996	1
CCCGAAT	30	2.1633077E-6	44.999996	40
GCTACGA	135	0.0	43.333332	10
ACGGGCT	70	0.0	41.785717	5
GGCCGAT	55	6.002665E-11	40.909092	8
CGAGCTA	50	1.0786607E-9	40.5	17
CGTATGG	45	1.9250365E-8	40.000004	2
AATGCGG	90	0.0	40.000004	2
ACGGGAT	175	0.0	39.857143	5