SRR3552693_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552693_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	729673
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3607	0.4943310222524336	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGC	3505	0.4803521577473745	No Hit
GAATCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTC	3411	0.467469674772124	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCG	3064	0.41991412591667776	No Hit
GCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTGC	1872	0.2565532779752026	TruSeq Adapter, Index 13 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1778	0.24367079499995203	No Hit
GAACTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCT	1229	0.16843161251683972	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAATCGCTGT	1040	0.14252959887511255	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	916	0.12553568516307992	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	847	0.11607939446848109	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCT	801	0.10977520067208188	No Hit
CCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTGC	791	0.10840472375982119	TruSeq Adapter, Index 13 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGAA	25	3.8893995E-5	45.000004	28
TCCGACC	25	3.8893995E-5	45.000004	28
AATAGCG	25	3.8893995E-5	45.000004	1
TCGAACA	25	3.8893995E-5	45.000004	30
CCCGACA	25	3.8893995E-5	45.000004	23
GTCGATG	20	7.0315925E-4	45.0	1
CTATCGA	20	7.0315925E-4	45.0	41
CGACCGT	20	7.0315925E-4	45.0	15
TCGATAG	20	7.0315925E-4	45.0	1
GTTAACG	35	1.2111195E-7	45.0	1
GTTCGCC	20	7.0315925E-4	45.0	29
CGCTACA	85	0.0	45.0	28
CTTGACG	20	7.0315925E-4	45.0	1
ACGTCGA	20	7.0315925E-4	45.0	30
ACGTCCA	20	7.0315925E-4	45.0	45
CTCGACG	35	1.2111195E-7	45.0	1
GTATACG	20	7.0315925E-4	45.0	1
CGGTCGA	40	6.8084773E-9	45.0	41
TGTACCG	20	7.0315925E-4	45.0	19
TACGTCG	20	7.0315925E-4	45.0	29