SRR3552689_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552689_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	593497
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2335	0.39343080082965876	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1641	0.27649676409484797	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1058	0.1782654335236741	No Hit
GCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTGC	736	0.12401073636429502	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	668	0.1125532226784634	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	658	0.11086829419525288	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGTCG	35	1.210592E-7	45.000004	1
TAAGACG	35	1.210592E-7	45.000004	1
TAGTCGG	35	1.210592E-7	45.000004	2
TCGCCCG	25	3.8885177E-5	45.0	1
GCGACGT	20	7.0305256E-4	45.0	41
GGTAACG	25	3.8885177E-5	45.0	33
CAACGTA	20	7.0305256E-4	45.0	33
GGTCGCG	20	7.0305256E-4	45.0	28
TCCGATA	40	6.8048394E-9	45.0	17
TCCGAGC	25	3.8885177E-5	45.0	12
CGGCCGA	20	7.0305256E-4	45.0	39
TAAACCG	20	7.0305256E-4	45.0	1
TAACGGA	20	7.0305256E-4	45.0	3
ACGGGTC	40	6.8048394E-9	45.0	5
CCGTCGA	25	3.8885177E-5	45.0	41
ATCCGCG	20	7.0305256E-4	45.0	1
TCGGATT	20	7.0305256E-4	45.0	27
CCCGTAG	25	3.8885177E-5	45.0	22
CTACGAA	100	0.0	45.0	11
GTCCGAT	40	6.8048394E-9	45.0	16