SRR3552688_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552688_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	873765
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2642	0.30236963027816405	No Hit
GCCCCTGGGAATGATACCTGTCTCTTATACACATCTGACGCATCCCACTTC	2406	0.2753600796552849	No Hit
GCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGC	2186	0.2501816850068382	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGC	1675	0.19169914107340075	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCG	1641	0.1878079346277317	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1627	0.18620567315010328	No Hit
CCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGC	1608	0.1840311754304647	No Hit
GAATCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTC	1602	0.18334449194005253	No Hit
GTATTCGGGCACTAACATTATATTGCAATGAGAGAAATTTTAAAAAGTCTC	1504	0.17212866159665358	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1228	0.1405412210376932	No Hit
CTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGCT	1089	0.12463305350981098	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	918	0.10506257403306381	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTTA	20	7.0323556E-4	45.000004	38
TCGATAT	20	7.0323556E-4	45.000004	19
ATCGTTC	20	7.0323556E-4	45.000004	34
TCCGTAC	20	7.0323556E-4	45.000004	32
TTACGCG	20	7.0323556E-4	45.000004	1
GCAATTC	30	2.1649012E-6	45.000004	9
CCGAACC	20	7.0323556E-4	45.000004	26
CGTCAAT	30	2.1649012E-6	45.000004	14
GTATTCG	165	0.0	45.0	1
CGAAACG	25	3.8900354E-5	45.0	2
CGCGTAA	25	3.8900354E-5	45.0	31
GCCCGTA	25	3.8900354E-5	45.0	41
TTAACGG	60	3.6379788E-12	41.250004	2
CGAATAT	345	0.0	40.434784	14
TAGGGAC	470	0.0	40.212765	5
TAGCCGT	45	1.9274012E-8	40.0	44
CTACGCA	135	0.0	40.0	15
AACGCAT	180	0.0	40.0	27
GCTACGA	360	0.0	40.0	10
CCTGGGA	1975	0.0	39.531647	4