SRR3552679_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552679_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	458466
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1324	0.2887891359446502	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1229	0.26806786108457337	No Hit
GCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTCTGC	835	0.18212910008593877	TruSeq Adapter, Index 22 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTCTGC	833	0.18169286272046345	TruSeq Adapter, Index 22 (95% over 22bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	792	0.17274999672821978	No Hit
CTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTCTGCT	676	0.1474482295306522	TruSeq Adapter, Index 20 (95% over 22bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGC	485	0.10578756112776085	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAAAACG	35	1.2097917E-7	45.000004	1
TATTTCG	25	3.8871243E-5	45.0	28
TCGTTCG	20	7.0288463E-4	45.0	27
CTCCGTA	20	7.0288463E-4	45.0	14
CGAGTTA	25	3.8871243E-5	45.0	11
GCGAAAT	20	7.0288463E-4	45.0	7
TTCACCG	50	2.1827873E-11	45.0	23
CGATTAC	20	7.0288463E-4	45.0	10
TACGGGC	80	0.0	45.0	4
TAACGCA	85	0.0	45.0	26
TGCGGAT	20	7.0288463E-4	45.0	4
CGTTCGA	20	7.0288463E-4	45.0	28
TCGATAC	20	7.0288463E-4	45.0	11
AACGGAC	20	7.0288463E-4	45.0	41
GCCGATA	20	7.0288463E-4	45.0	9
TAACCGG	20	7.0288463E-4	45.0	26
CGCTCGT	50	2.1827873E-11	45.0	13
ACTGTCG	20	7.0288463E-4	45.0	15
CTCGAGG	45	3.8380676E-10	45.0	2
TATAGCG	25	3.8871243E-5	45.0	1