SRR3552676_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552676_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	611208
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1789	0.29269904844177436	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1347	0.2203832410570542	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGC	1121	0.18340728524495753	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTC	951	0.15559351317391135	No Hit
GCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC	848	0.13874163950733628	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCG	847	0.13857802908338895	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	670	0.10961898404471145	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	631	0.10323817751076558	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATTCG	35	1.210683E-7	45.000004	10
ACGTTAG	20	7.0306927E-4	45.0	1
CACGCAT	20	7.0306927E-4	45.0	22
TTCGTAA	20	7.0306927E-4	45.0	1
TCTAGCA	20	7.0306927E-4	45.0	16
TACGAAT	75	0.0	45.0	12
GTCACTA	20	7.0306927E-4	45.0	22
TAATCGC	20	7.0306927E-4	45.0	17
TATGCGT	25	3.888656E-5	44.999996	39
TTATCGT	25	3.888656E-5	44.999996	22
GCGATTC	65	0.0	44.999996	9
ATACGCG	25	3.888656E-5	44.999996	1
CGATCGA	30	2.163828E-6	44.999996	41
CCGCATA	25	3.888656E-5	44.999996	41
GCTACGA	85	0.0	42.35294	10
TACGGGT	55	6.002665E-11	40.909092	4
CCGATGA	270	0.0	40.0	18
TTAATCG	85	0.0	39.705883	20
TACGCGG	75	0.0	39.0	2
TACGCAT	110	0.0	38.863636	16