SRR3552675_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552675_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	704467
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2693	0.38227482621613224	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1747	0.2479889050871084	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGC	1522	0.2160498646494442	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCG	1334	0.18936302197264032	No Hit
GAATCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTC	1320	0.18737570390096342	No Hit
GCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC	1148	0.16296008187750455	TruSeq Adapter, Index 20 (95% over 23bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1038	0.1473454398857576	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAAATC	20	7.0314243E-4	45.000004	15
CGTTCCC	20	7.0314243E-4	45.000004	22
ACTCGGA	20	7.0314243E-4	45.000004	10
TCGGTTA	20	7.0314243E-4	45.000004	31
CTAACGG	45	3.8380676E-10	45.0	2
CTAACCG	25	3.8892627E-5	45.0	42
TGCGTAG	25	3.8892627E-5	45.0	1
CTTACGA	25	3.8892627E-5	45.0	29
CTATGCG	30	2.164301E-6	44.999996	1
CCCGTTA	30	2.164301E-6	44.999996	34
ACGATAG	30	2.164301E-6	44.999996	1
TTAACGG	90	0.0	42.5	2
GTTAACG	70	0.0	41.785713	1
CATACGA	130	0.0	41.53846	18
TACGAAT	60	3.6379788E-12	41.249996	12
GTCGAAT	55	6.002665E-11	40.909092	43
GCGATAC	45	1.9264917E-8	40.0	9
GCTAAGT	90	0.0	40.0	24
ATAGGGA	550	0.0	39.68182	4
ATTCGTG	40	3.4556797E-7	39.375004	3