SRR3552669_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552669_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	372434
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2912	0.7818835015063073	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2644	0.7099244429885564	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1405	0.3772480493188055	No Hit
CCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC	780	0.209433080760618	No Hit
GCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC	757	0.2032574899176767	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCC	686	0.1841937094894666	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	653	0.1753330791495943	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	622	0.1670094567091082	No Hit
CTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGCT	495	0.1329094550980845	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACGAA	30	2.1615342E-6	45.000004	21
GTTACTC	30	2.1615342E-6	45.000004	37
ACATGCG	45	3.8380676E-10	45.000004	1
AACGTTC	25	3.88571E-5	45.0	1
TCGCAAT	25	3.88571E-5	45.0	22
TTGTGCG	40	6.7939254E-9	45.0	1
ATAATCG	25	3.88571E-5	45.0	28
GAACTCG	20	7.027139E-4	45.0	11
TTGTCGA	20	7.027139E-4	45.0	11
TAAACCG	20	7.027139E-4	45.0	34
GATCACG	20	7.027139E-4	45.0	1
ATAGACG	20	7.027139E-4	45.0	1
CTACGTA	35	1.2089731E-7	45.0	31
CTACGAA	35	1.2089731E-7	45.0	11
TATTCGG	20	7.027139E-4	45.0	3
TTTGGAC	20	7.027139E-4	45.0	23
CGAATAT	35	1.2089731E-7	45.0	14
AGTTATC	35	1.2089731E-7	45.0	23
ATAACGG	35	1.2089731E-7	45.0	2
CACGTTA	20	7.027139E-4	45.0	26