SRR3552666_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552666_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	910892
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC	2432	0.26699103735678875	No Hit
ACCCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCGCACATGTTC	1879	0.206281315457815	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1782	0.19563241306323909	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1729	0.18981394062084198	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTC	1219	0.1338248661751338	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCG	1196	0.1312998687001313	No Hit
CTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGCT	1166	0.1280063937327367	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC	1146	0.12581074375447365	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1138	0.1249324837631684	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGC	1069	0.11735749133816084	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	978	0.10736728393706389	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTG	20	7.032516E-4	45.0	16
ATAGGCG	20	7.032516E-4	45.0	1
CCGATCG	25	3.8901657E-5	45.0	40
TCTAGCG	20	7.032516E-4	45.0	1
ATCGTGA	20	7.032516E-4	45.0	30
TATTACG	40	6.8121153E-9	45.0	1
TTACGAG	45	3.8380676E-10	45.0	1
CGGTCTA	20	7.032516E-4	45.0	31
CGATCGA	35	1.2115561E-7	45.0	41
CAATTCG	30	2.1650048E-6	44.999996	26
CGTTACA	30	2.1650048E-6	44.999996	32
TATCGGG	105	0.0	42.857143	3
CGAATAT	180	0.0	42.5	14
GCTACGA	180	0.0	42.5	10
CGTTAGG	170	0.0	42.35294	2
GTATCGG	65	0.0	41.538464	2
TACGAAT	185	0.0	41.351353	12
AGGGTAC	280	0.0	40.98214	6
ATACCCC	375	0.0	40.8	29
ACGTAAG	105	0.0	40.714287	1