SRR3552662_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552662_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1103686
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2197	0.1990602399595537	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1906	0.17269404522663148	No Hit
GCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCTTCTGC	1611	0.1459654285729818	Illumina Single End Adapter 1 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCTTCTGC	1440	0.1304718914618832	Illumina Single End Adapter 1 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCTTCTGCT	1143	0.10356206384786977	Illumina Single End Adapter 1 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATAG	25	3.8907056E-5	45.0	18
ACGATAG	20	7.033164E-4	45.0	1
TCGGAAA	25	3.8907056E-5	45.0	33
ACCTAAC	20	7.033164E-4	45.0	36
ACCGTTC	20	7.033164E-4	45.0	23
ATCGATA	20	7.033164E-4	45.0	17
CGAATAT	60	3.6379788E-12	41.250004	14
TTAACGG	100	0.0	40.5	2
ACGTACG	45	1.9281288E-8	40.0	1
CGCTATT	40	3.4580626E-7	39.375	42
TCGTATA	40	3.4580626E-7	39.375	29
TTACGCG	35	6.248065E-6	38.571426	1
TCGACGT	35	6.248065E-6	38.571426	26
GTTAACG	65	9.094947E-12	38.07692	1
ATCTCCG	30	1.1398924E-4	37.500004	35
ACTTATC	30	1.1398924E-4	37.500004	40
GTCGTTA	30	1.1398924E-4	37.500004	31
GAACGTT	30	1.1398924E-4	37.500004	34
TCGTAAG	30	1.1398924E-4	37.500004	1
TAAATCG	30	1.1398924E-4	37.500004	29