SRR3552659_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552659_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1142723
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2228	0.1949728849423701	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1636	0.14316680420364342	No Hit
CCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCTGC	1630	0.14264174257453469	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCTGC	1615	0.1413290885017629	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCTGCT	1233	0.10790016478184127	Illumina Single End Adapter 1 (95% over 22bp)
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1148	0.10046179170280112	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCTA	25	3.8907907E-5	45.000004	17
TCAATCG	25	3.8907907E-5	45.000004	19
AGCGTAA	20	7.033269E-4	45.0	44
CACGGAT	20	7.033269E-4	45.0	45
ATTACGA	20	7.033269E-4	45.0	19
ACCGAAT	20	7.033269E-4	45.0	23
GTATCGT	20	7.033269E-4	45.0	29
ACGCATT	160	0.0	42.1875	17
ACCGCTA	160	0.0	42.1875	26
TACGCAT	160	0.0	42.1875	16
GCAAACG	65	0.0	41.538464	1
AAATGCG	65	0.0	41.538464	1
CGATCTA	50	1.0822987E-9	40.500004	10
GCTACGA	135	0.0	40.0	10
TCTAGCG	40	3.45819E-7	39.375	1
CTATGCG	35	6.2482577E-6	38.571426	1
TAACGAG	35	6.2482577E-6	38.571426	1
CGGATAC	35	6.2482577E-6	38.571426	23
TATTACG	35	6.2482577E-6	38.571426	1
TATAGCG	35	6.2482577E-6	38.571426	1