SRR3552657_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552657_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	728661
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC	1975	0.2710451087680005	TruSeq Adapter, Index 27 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1535	0.21066037567538265	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1425	0.1955641924022282	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1299	0.17827220065297855	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	888	0.12186737042328326	No Hit
CTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGCT	833	0.11431927878670603	TruSeq Adapter, Index 20 (95% over 22bp)
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	807	0.11075109001305135	No Hit
CCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC	735	0.10086995187062298	TruSeq Adapter, Index 27 (95% over 21bp)
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	735	0.10086995187062298	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTAC	40	6.8084773E-9	45.000004	29
CTGCGTA	20	7.031584E-4	45.000004	40
CCGTATC	40	6.8084773E-9	45.000004	41
CTAACGA	20	7.031584E-4	45.000004	36
CGTAGAC	20	7.031584E-4	45.000004	43
CGCTAAC	20	7.031584E-4	45.000004	36
TTACGAG	20	7.031584E-4	45.000004	1
CCGAACC	20	7.031584E-4	45.000004	25
CGCGTGA	20	7.031584E-4	45.000004	41
CCAAACG	20	7.031584E-4	45.000004	1
AATCGGC	20	7.031584E-4	45.000004	19
AATCGCG	20	7.031584E-4	45.000004	1
TCGTTAG	35	1.2111013E-7	45.0	1
TCACCGA	25	3.889395E-5	45.0	21
GTATGCG	35	1.2111013E-7	45.0	1
CGGTCTA	35	1.2111013E-7	45.0	31
ATGTTCG	25	3.889395E-5	45.0	1
TGCGTAT	30	2.1644046E-6	44.999996	12
ACGCATT	185	0.0	43.783783	17
TACGAGG	105	0.0	40.714287	2