SRR3552655_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552655_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	469093
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTGC	1348	0.2873630602034138	TruSeq Adapter, Index 14 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1270	0.2707352273429789	No Hit
CCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTGC	1155	0.24621983274105563	TruSeq Adapter, Index 14 (95% over 21bp)
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1063	0.22660751705951698	No Hit
CTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTGCT	1012	0.21573547249692493	TruSeq Adapter, Index 21 (95% over 23bp)
GAATGATACCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCG	986	0.21019286154344663	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGC	931	0.19846810760339634	No Hit
GAATCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTC	921	0.19633633415975082	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	908	0.19356502868301168	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	775	0.16521244188252648	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCC	581	0.12385603707580373	No Hit
TCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTGC	572	0.12193744097652279	TruSeq Adapter, Index 14 (95% over 21bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	517	0.11021268703647251	No Hit
AAAACTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTC	509	0.10850726828155612	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTGACG	20	7.0290104E-4	45.000004	1
TTAGGCG	20	7.0290104E-4	45.000004	1
TCGTTGC	40	6.7993824E-9	45.000004	16
TCGTTGA	20	7.0290104E-4	45.000004	24
GCCCATA	20	7.0290104E-4	45.000004	18
ATTAGTA	20	7.0290104E-4	45.000004	12
CTCAACT	20	7.0290104E-4	45.000004	22
TTTCGTA	20	7.0290104E-4	45.000004	24
GCGCAAT	20	7.0290104E-4	45.000004	34
ATCGTTG	20	7.0290104E-4	45.000004	23
TGTTGCG	20	7.0290104E-4	45.000004	1
CGTAATA	20	7.0290104E-4	45.000004	32
CGTCCGA	20	7.0290104E-4	45.000004	16
TGTCGTT	20	7.0290104E-4	45.000004	26
TTCGACA	20	7.0290104E-4	45.000004	15
ATATTAC	20	7.0290104E-4	45.000004	41
GACTATA	20	7.0290104E-4	45.000004	16
TAGTAGA	20	7.0290104E-4	45.000004	35
AGGTATA	25	3.8872626E-5	45.0	39
ACTATCC	25	3.8872626E-5	45.0	40