##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552655_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 469093 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.676759192740032 31.0 31.0 34.0 30.0 34.0 2 31.832133500180134 33.0 31.0 34.0 30.0 34.0 3 31.879844721622366 33.0 31.0 34.0 30.0 34.0 4 35.52225891241182 37.0 35.0 37.0 33.0 37.0 5 35.32079566312011 37.0 35.0 37.0 33.0 37.0 6 35.31712048570326 37.0 35.0 37.0 32.0 37.0 7 35.67132956577907 37.0 35.0 37.0 35.0 37.0 8 35.44308484671483 37.0 35.0 37.0 33.0 37.0 9 37.11146403804789 39.0 37.0 39.0 33.0 39.0 10 36.740799798760584 39.0 37.0 39.0 32.0 39.0 11 36.70190559228128 39.0 35.0 39.0 32.0 39.0 12 36.576416616747636 39.0 35.0 39.0 32.0 39.0 13 36.383077556049656 39.0 35.0 39.0 32.0 39.0 14 37.48056355562756 39.0 36.0 41.0 32.0 41.0 15 37.601795379594236 39.0 36.0 41.0 33.0 41.0 16 37.654458710746056 39.0 36.0 41.0 33.0 41.0 17 37.63442430392268 39.0 36.0 41.0 33.0 41.0 18 37.602460492908655 39.0 36.0 41.0 33.0 41.0 19 37.52906992856427 39.0 36.0 41.0 32.0 41.0 20 37.450865819784134 39.0 35.0 41.0 32.0 41.0 21 37.35998618610809 39.0 35.0 41.0 32.0 41.0 22 37.39467440358308 39.0 35.0 41.0 32.0 41.0 23 37.295726007422836 39.0 35.0 41.0 32.0 41.0 24 37.27622454396037 39.0 35.0 41.0 32.0 41.0 25 37.09829820525994 39.0 35.0 41.0 32.0 41.0 26 37.07210510495786 39.0 35.0 41.0 32.0 41.0 27 36.85283088854449 39.0 35.0 41.0 31.0 41.0 28 36.860577753238694 39.0 35.0 41.0 31.0 41.0 29 36.82668468725818 39.0 35.0 41.0 31.0 41.0 30 36.68677639615172 39.0 35.0 40.0 31.0 41.0 31 36.66715555337641 39.0 35.0 40.0 31.0 41.0 32 36.50177896493872 38.0 35.0 40.0 30.0 41.0 33 36.397475553888036 38.0 35.0 40.0 30.0 41.0 34 36.25688296350617 38.0 35.0 40.0 30.0 41.0 35 36.10553131255423 38.0 35.0 40.0 30.0 41.0 36 36.02331520615315 38.0 35.0 40.0 30.0 41.0 37 35.98094407718725 38.0 35.0 40.0 30.0 41.0 38 35.83513290541534 38.0 35.0 40.0 29.0 41.0 39 35.83368329947366 38.0 35.0 40.0 29.0 41.0 40 35.67305630226842 38.0 35.0 40.0 29.0 41.0 41 35.57309744549588 38.0 34.0 40.0 29.0 41.0 42 35.509602573476904 38.0 34.0 40.0 29.0 41.0 43 35.504716548744064 38.0 34.0 40.0 29.0 41.0 44 35.44971253035112 37.0 34.0 40.0 29.0 41.0 45 35.424694037216504 37.0 34.0 40.0 29.0 41.0 46 35.32563692061063 37.0 34.0 40.0 28.0 41.0 47 35.21043588371602 37.0 34.0 40.0 28.0 41.0 48 35.11564231399744 37.0 34.0 40.0 28.0 41.0 49 35.0924251694227 37.0 34.0 40.0 28.0 41.0 50 35.002197858420395 37.0 34.0 40.0 27.0 41.0 51 34.2860584148559 36.0 33.0 39.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 7.0 9 19.0 10 26.0 11 24.0 12 22.0 13 24.0 14 33.0 15 49.0 16 71.0 17 120.0 18 214.0 19 391.0 20 689.0 21 1070.0 22 1622.0 23 2208.0 24 2925.0 25 3761.0 26 4301.0 27 5494.0 28 6264.0 29 7596.0 30 9760.0 31 12231.0 32 15706.0 33 21850.0 34 35651.0 35 46164.0 36 44790.0 37 61290.0 38 87313.0 39 97349.0 40 59.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.35297904679882 20.320277642173302 23.905707397040672 15.421035913987206 2 28.89704173799225 27.270498600490733 25.589808417520622 18.242651243996395 3 30.33897329527407 27.117650444581354 25.82131901350052 16.722057246644056 4 28.921557132594177 27.05391041861635 25.427793635803564 18.59673881298591 5 24.63690568821108 30.925850524309677 24.344639549087283 20.09260423839196 6 24.682738817249458 36.06449041021717 24.085629075684352 15.167141696849026 7 78.43028994250606 7.2354522450772025 9.150424329503958 5.183833482912769 8 78.91825288375652 6.9495814262843405 8.014828616073997 6.117337073885136 9 73.68325683819627 9.121858565359107 9.943444050540084 7.2514405459045435 10 41.16369248741721 25.71323809990769 16.95697868013379 16.166090732541306 11 31.6822037421151 26.636935533039292 21.773294421362074 19.90756630348353 12 26.901914972084427 22.1231184434643 29.493725124868632 21.48124145958264 13 24.41115088052902 25.00655520333921 30.099148782863956 20.483145133267815 14 20.72659366053213 29.78663079602552 27.549974098952664 21.936801444489685 15 18.482475756406515 25.753528617992593 33.552408584225304 22.21158704137559 16 21.504264612774012 24.130609495345272 31.10406678419844 23.26105910768227 17 21.574613136414314 23.758615029429134 26.731799451281518 27.93497238287504 18 23.414546795624748 23.84559138592987 28.169893816364773 24.56996800208061 19 24.113981662484836 26.631606099430176 26.120406827643983 23.134005410441 20 25.627540807473142 24.80510261291471 25.69319942953743 23.87415715007472 21 23.944718851059385 27.385401189103227 25.97075633190007 22.69912362793732 22 21.358238131884296 24.634347560078705 26.271549564798452 27.735864743238547 23 21.068530120892873 26.983775072320416 26.29116188047999 25.656532926306724 24 21.89565821702733 25.17667072414212 28.33595896762476 24.591712091205796 25 22.325636920610627 26.422692301952917 26.240425672521226 25.01124510491523 26 20.85471324449523 27.697705998597293 26.128933921418568 25.318646835488913 27 22.26168371730126 26.734570756758252 25.951570370907262 25.052175155033225 28 20.04250756246629 26.951372115977 28.2106106891384 24.795509632418305 29 21.76689910103114 26.40904895191359 26.116569635445426 25.70748231160985 30 22.930847401261584 26.90532580959426 25.494304967245302 24.669521821898858 31 24.373844845265225 27.115945025826438 22.646895178568002 25.86331495034034 32 23.990551980097763 28.50991168062623 23.722588058231523 23.776948281044483 33 24.705122438407738 25.42587503970428 23.36402376501035 26.504978756877634 34 23.62601872123438 26.83092691641103 24.74988968072429 24.793164681630294 35 23.952606412800872 24.81128475590128 25.763547953177728 25.472560878120117 36 26.210794021654554 26.94604268236789 23.770979315402275 23.072183980575282 37 24.857331062284025 26.528428264757736 26.04089167819601 22.57334899476223 38 23.81468067099701 27.639082228897045 25.913411626266008 22.632825473839944 39 26.865674823542452 23.201582628604562 26.46404870675964 23.468693841093344 40 25.570622456527808 23.06621501493307 28.785763164233956 22.57739936430516 41 22.768619442200162 24.379813810907432 26.52352518583735 26.32804156105506 42 23.26191181705973 24.56527810050459 27.10677840001876 25.066031682416916 43 23.906133751729403 23.91785850566945 27.502861905848093 24.67314583675305 44 23.809777592076625 24.041288188056527 27.21549884564468 24.933435374222167 45 23.625805543890017 23.671638672928395 26.426742671495845 26.275813111685743 46 25.260662597821753 24.477875389315127 26.52437789521481 23.737084117648312 47 23.98905973868721 24.863513205270596 27.748868561244784 23.398558494797406 48 22.220114135150173 23.768421187269904 28.230009827475577 25.781454850104353 49 23.13997437608321 23.31627203987269 29.302505046973625 24.241248537070476 50 22.33949344799432 22.656274981720042 29.149017359031156 25.855214211254484 51 21.877964497445067 23.28749309838348 26.438254248091532 28.396288156079923 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1649.0 1 1788.5 2 1928.0 3 2041.0 4 2154.0 5 1615.5 6 1077.0 7 1093.0 8 1109.0 9 1226.0 10 1343.0 11 1312.5 12 1282.0 13 1254.0 14 1226.0 15 1273.0 16 1320.0 17 1283.0 18 1246.0 19 1275.0 20 1304.0 21 1323.5 22 1343.0 23 1344.5 24 1346.0 25 1647.0 26 2450.0 27 2952.0 28 3577.0 29 4202.0 30 4460.0 31 4718.0 32 5577.5 33 6437.0 34 7797.5 35 9158.0 36 9655.0 37 10152.0 38 11160.5 39 12169.0 40 14171.5 41 16174.0 42 18988.0 43 21802.0 44 25911.5 45 30021.0 46 35338.5 47 40656.0 48 43708.5 49 46761.0 50 45605.5 51 44450.0 52 38017.0 53 31584.0 54 29360.5 55 27137.0 56 26484.0 57 25831.0 58 23544.5 59 21258.0 60 21047.5 61 20837.0 62 19705.5 63 18574.0 64 17042.5 65 15511.0 66 13664.5 67 11818.0 68 10300.5 69 8783.0 70 7367.5 71 5952.0 72 5126.0 73 4300.0 74 3920.5 75 2658.5 76 1776.0 77 1352.5 78 929.0 79 796.0 80 663.0 81 571.5 82 480.0 83 300.5 84 121.0 85 76.0 86 31.0 87 30.5 88 30.0 89 18.5 90 7.0 91 4.5 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 469093.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.21621413813769 #Duplication Level Percentage of deduplicated Percentage of total 1 77.06666088334003 22.515960672789024 2 9.098388533103147 5.316409353902361 3 3.3479909222497355 2.934468591509681 4 1.637920800106979 1.914153793489413 5 0.9612950190035058 1.4042700562565784 6 0.663194077612244 1.162561211199842 7 0.487249202099991 0.9964903919033047 8 0.37682388955381463 0.8807493959656156 9 0.33151169012314824 0.871696487514046 >10 4.9454027264913725 37.763213473473925 >50 1.0090856052754549 18.371640060022656 >100 0.06425436560364692 3.191571144194136 >500 0.00657146920946389 1.4292845843259614 >1k 0.0036508162274799384 1.247530783453466 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTGC 1348 0.2873630602034138 TruSeq Adapter, Index 14 (95% over 21bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1270 0.2707352273429789 No Hit CCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTGC 1155 0.24621983274105563 TruSeq Adapter, Index 14 (95% over 21bp) ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC 1063 0.22660751705951698 No Hit CTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTGCT 1012 0.21573547249692493 TruSeq Adapter, Index 21 (95% over 23bp) GAATGATACCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCG 986 0.21019286154344663 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGC 931 0.19846810760339634 No Hit GAATCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTC 921 0.19633633415975082 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 908 0.19356502868301168 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 775 0.16521244188252648 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCC 581 0.12385603707580373 No Hit TCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTGC 572 0.12193744097652279 TruSeq Adapter, Index 14 (95% over 21bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 517 0.11021268703647251 No Hit AAAACTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTC 509 0.10850726828155612 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.2635468872910065E-4 0.0 0.0 0.22831293581443338 0.0 2 4.2635468872910065E-4 0.0 0.0 1.0328442334462462 0.0 3 4.2635468872910065E-4 0.0 0.0 1.3724357430189749 0.0 4 4.2635468872910065E-4 0.0 0.0 1.7962323036157009 0.0 5 4.2635468872910065E-4 0.0 0.0 3.184229992773288 0.0 6 4.2635468872910065E-4 0.0 0.0 4.213450211365337 0.0 7 4.2635468872910065E-4 0.0 0.0 5.151856881258087 0.0 8 4.2635468872910065E-4 0.0 0.0 6.563730432984504 0.0 9 4.2635468872910065E-4 0.0 0.0 7.272758280340999 0.0 10 4.2635468872910065E-4 0.0 0.0 8.696356586007466 0.0 11 4.2635468872910065E-4 0.0 0.0 10.110575088521893 0.0 12 4.2635468872910065E-4 0.0 0.0 11.511576595685717 0.0 13 4.2635468872910065E-4 0.0 0.0 12.007000743988932 0.0 14 4.2635468872910065E-4 0.0 0.0 12.218899024287294 0.0 15 4.2635468872910065E-4 0.0 0.0 12.573412947965542 0.0 16 4.2635468872910065E-4 0.0 0.0 13.252382789766635 0.0 17 4.2635468872910065E-4 0.0 0.0 14.081642659344736 0.0 18 4.2635468872910065E-4 0.0 0.0 15.187606721908022 0.0 19 4.2635468872910065E-4 0.0 0.0 15.714581117177191 0.0 20 4.2635468872910065E-4 0.0 0.0 16.20744713734803 0.0 21 4.2635468872910065E-4 0.0 0.0 16.718859586478587 0.0 22 4.2635468872910065E-4 0.0 0.0 17.238799129383725 0.0 23 4.2635468872910065E-4 0.0 0.0 17.760657268388144 0.0 24 4.2635468872910065E-4 0.0 0.0 18.165907400025155 0.0 25 4.2635468872910065E-4 0.0 0.0 18.526603466689973 0.0 26 4.2635468872910065E-4 0.0 0.0 18.847861724647352 0.0 27 4.2635468872910065E-4 0.0 0.0 19.198325278782672 0.0 28 4.2635468872910065E-4 0.0 0.0 19.554331443871472 0.0 29 4.2635468872910065E-4 0.0 0.0 19.914174801158833 0.0 30 4.2635468872910065E-4 0.0 0.0 20.315800917941644 0.0 31 4.2635468872910065E-4 0.0 0.0 20.6660512947326 0.0 32 4.2635468872910065E-4 0.0 0.0 21.034421745794543 0.0 33 4.2635468872910065E-4 0.0 0.0 21.386164363996052 0.0 34 4.2635468872910065E-4 0.0 0.0 21.733003903277176 0.0 35 4.2635468872910065E-4 0.0 0.0 22.115657236411543 0.0 36 4.2635468872910065E-4 0.0 0.0 22.456954164739187 0.0 37 4.2635468872910065E-4 0.0 0.0 22.78268914692822 0.0 38 4.2635468872910065E-4 0.0 0.0 23.08433508920406 0.0 39 4.2635468872910065E-4 0.0 0.0 23.40751194326072 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTGACG 20 7.0290104E-4 45.000004 1 TTAGGCG 20 7.0290104E-4 45.000004 1 TCGTTGC 40 6.7993824E-9 45.000004 16 TCGTTGA 20 7.0290104E-4 45.000004 24 GCCCATA 20 7.0290104E-4 45.000004 18 ATTAGTA 20 7.0290104E-4 45.000004 12 CTCAACT 20 7.0290104E-4 45.000004 22 TTTCGTA 20 7.0290104E-4 45.000004 24 GCGCAAT 20 7.0290104E-4 45.000004 34 ATCGTTG 20 7.0290104E-4 45.000004 23 TGTTGCG 20 7.0290104E-4 45.000004 1 CGTAATA 20 7.0290104E-4 45.000004 32 CGTCCGA 20 7.0290104E-4 45.000004 16 TGTCGTT 20 7.0290104E-4 45.000004 26 TTCGACA 20 7.0290104E-4 45.000004 15 ATATTAC 20 7.0290104E-4 45.000004 41 GACTATA 20 7.0290104E-4 45.000004 16 TAGTAGA 20 7.0290104E-4 45.000004 35 AGGTATA 25 3.8872626E-5 45.0 39 ACTATCC 25 3.8872626E-5 45.0 40 >>END_MODULE