SRR3552649_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552649_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	574481
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1178	0.20505464932695774	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1165	0.20279173723761096	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1001	0.17424423087969837	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	873	0.151963250307669	No Hit
GCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGC	796	0.1385598479323076	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	704	0.12254539314616149	No Hit
CCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGC	637	0.11088269237798988	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	637	0.11088269237798988	No Hit
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	626	0.10896792061008109	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTCAT	30	2.1635988E-6	45.000004	17
AATTCGG	30	2.1635988E-6	45.000004	2
TATCAGC	20	7.030339E-4	45.0	35
AACGTGA	20	7.030339E-4	45.0	32
CTATCGC	25	3.8883612E-5	45.0	41
GTTAGCG	35	1.210501E-7	45.0	1
CGATTGT	20	7.030339E-4	45.0	10
TCGATAG	40	6.8048394E-9	45.0	1
ATATCGT	25	3.8883612E-5	45.0	11
TCGGAAC	25	3.8883612E-5	45.0	43
CGGATGT	20	7.030339E-4	45.0	25
TATTACG	35	1.210501E-7	45.0	1
CGAATGT	20	7.030339E-4	45.0	29
TTACGTG	25	3.8883612E-5	45.0	36
ACGTAAC	20	7.030339E-4	45.0	12
GCTAATT	20	7.030339E-4	45.0	40
TTCGCTA	20	7.030339E-4	45.0	19
TTATTCG	20	7.030339E-4	45.0	32
TATCGCG	20	7.030339E-4	45.0	1
TACCGTC	25	3.8883612E-5	45.0	22