SRR3552647_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552647_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1181728
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGC	4181	0.35380392103766684	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCG	3771	0.3191089658533943	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTC	3654	0.30920821034958973	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3182	0.2692667009667199	No Hit
GCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTGC	1892	0.16010452489913077	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1715	0.1451264588805546	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1380	0.11677814183974654	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGATTA	20	7.033367E-4	45.0	22
CCATACG	20	7.033367E-4	45.0	1
CGTAAGT	20	7.033367E-4	45.0	22
ACCCGTT	25	3.8908736E-5	45.0	21
TCGAATC	20	7.033367E-4	45.0	25
AATACGC	20	7.033367E-4	45.0	30
GCCCGTA	25	3.8908736E-5	45.0	31
ACGACGT	20	7.033367E-4	45.0	16
TAGTGCG	90	0.0	42.500004	1
CTATGCG	80	0.0	42.1875	1
TACGCAT	115	0.0	41.08696	16
TCGTTTA	45	1.9283107E-8	40.000004	38
CAGTACG	45	1.9283107E-8	40.000004	1
GATGAAT	1375	0.0	39.6	20
CTAGTCG	40	3.4583354E-7	39.375	1
CGTAACG	40	3.4583354E-7	39.375	29
GCTACGA	220	0.0	38.863636	10
CCGATGA	1270	0.0	38.799213	18
GTCGAAT	180	0.0	38.750004	43
ATCCGAT	35	6.2484396E-6	38.571426	21