SRR3552644_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552644_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	493118
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1349	0.2735653535259309	No Hit
GCTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCGTCTTCTGC	1027	0.20826658122396666	Illumina Single End Adapter 2 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	840	0.17034462339642842	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	672	0.13627569871714276	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	571	0.11579378566590552	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	20	7.0293626E-4	45.000004	1
AGCCGAT	20	7.0293626E-4	45.000004	24
TCACCGA	20	7.0293626E-4	45.000004	37
GTCGAAC	20	7.0293626E-4	45.000004	36
GTTTACG	20	7.0293626E-4	45.000004	1
CGTTGGA	20	7.0293626E-4	45.000004	32
TAGCGAC	20	7.0293626E-4	45.000004	40
TAACGAT	20	7.0293626E-4	45.000004	34
CGACAAT	20	7.0293626E-4	45.000004	19
CCGTCTA	20	7.0293626E-4	45.000004	20
TCGGACA	30	2.1629712E-6	45.000004	27
CTAGTCG	20	7.0293626E-4	45.000004	1
TGCGATG	20	7.0293626E-4	45.000004	1
CCTCACG	20	7.0293626E-4	45.000004	12
GTCCGAA	20	7.0293626E-4	45.000004	1
AGCGAAT	20	7.0293626E-4	45.000004	16
AATTCGC	30	2.1629712E-6	45.000004	13
ACGCTCA	20	7.0293626E-4	45.000004	45
CATCGGT	20	7.0293626E-4	45.000004	31
GCTACGA	30	2.1629712E-6	45.000004	10