SRR3552642_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552642_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	993885
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	2951	0.2969156391333001	No Hit
GCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	2942	0.29601010177233783	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2479	0.24942523531394475	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2212	0.22256096027206368	No Hit
CTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGCT	2055	0.20676436408638824	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1632	0.1642041081211609	No Hit
TCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	1389	0.13975459937517923	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1271	0.12788199842034037	No Hit
AAAACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTC	1102	0.11087801908671525	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1073	0.10796017647917013	No Hit
ACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	1057	0.10635033228190384	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCC	1006	0.10121895390311758	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCAAA	20	7.032824E-4	45.000004	37
TCCGCGA	20	7.032824E-4	45.000004	17
TACGATA	20	7.032824E-4	45.000004	40
TGCGACC	40	6.8139343E-9	45.000004	14
GAACGAC	20	7.032824E-4	45.000004	11
ACGCTAG	20	7.032824E-4	45.000004	1
TCGTAAT	20	7.032824E-4	45.000004	33
TATGTCG	20	7.032824E-4	45.000004	22
CCGCAAT	20	7.032824E-4	45.000004	33
ATTTCGG	20	7.032824E-4	45.000004	2
CTATCGT	25	3.8904232E-5	45.0	18
TAGCCGT	45	3.8380676E-10	45.0	44
GTATGCG	35	1.2117016E-7	45.0	1
TATTACG	50	2.1827873E-11	45.0	1
GTATACG	25	3.8904232E-5	45.0	1
TAGGACG	50	2.1827873E-11	45.0	1
TATCGTC	25	3.8904232E-5	45.0	39
TGTAACG	25	3.8904232E-5	45.0	1
TTCGAAC	25	3.8904232E-5	45.0	26
TCTATAC	25	3.8904232E-5	45.0	10