SRR3552641_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552641_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	680827
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGC	2849	0.4184616650044725	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCG	2752	0.4042142864486867	No Hit
GAATCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTC	2182	0.3204925774095328	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1928	0.2831850088201555	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1880	0.27613475963791095	No Hit
GCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC	1397	0.2051916272415753	No Hit
CCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC	1231	0.18080951548631297	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1176	0.17273110496499108	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1091	0.1602462887047664	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1060	0.15569300277456682	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTAGGATCGT	816	0.1198542360981571	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCC	712	0.10457869620329394	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGTCT	35	1.2109558E-7	45.000004	17
CATAGCG	65	0.0	45.000004	1
GTATGCG	25	3.889123E-5	45.000004	1
TCATCGG	25	3.889123E-5	45.000004	2
CAATGCG	25	3.889123E-5	45.000004	1
GCGTATA	25	3.889123E-5	45.000004	19
TACAACG	50	2.1827873E-11	45.000004	1
AACCGTA	20	7.0312584E-4	45.0	24
ATTAGCG	40	6.8084773E-9	45.0	1
ACGTTAT	20	7.0312584E-4	45.0	18
ACCGCGT	20	7.0312584E-4	45.0	39
CGTTAGT	20	7.0312584E-4	45.0	34
CGTTACA	20	7.0312584E-4	45.0	28
TACTATG	20	7.0312584E-4	45.0	22
AGTTACG	20	7.0312584E-4	45.0	1
TTACGAG	45	3.8380676E-10	45.0	1
ACGTATG	20	7.0312584E-4	45.0	1
TAGTGCG	20	7.0312584E-4	45.0	2
ACGAGTC	20	7.0312584E-4	45.0	45
GCGTACG	20	7.0312584E-4	45.0	37