SRR3552639_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552639_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	724778
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTGC	1403	0.19357651584347207	Illumina PCR Primer Index 7 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTGC	1359	0.1875056913979177	Illumina PCR Primer Index 7 (95% over 23bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1306	0.18019310740668176	No Hit
GGCTATGGGAATGATACCTGTCTCTTATACACATCTGACGCGGGTCATATC	1296	0.1788133745781467	No Hit
CTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTGCT	1095	0.15108074472459154	Illumina PCR Primer Index 7 (95% over 24bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1035	0.14280234775338102	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1017	0.1403188286620179	No Hit
GGCTATGGGCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCG	775	0.10692929421146889	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	758	0.10458374840295924	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	743	0.10251414916015664	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTC	20	7.031559E-4	45.000004	38
AGCCGTC	20	7.031559E-4	45.000004	24
CAGCGAT	20	7.031559E-4	45.000004	21
CGACGAA	20	7.031559E-4	45.000004	31
CGCGAAA	20	7.031559E-4	45.000004	30
ACGATAT	20	7.031559E-4	45.000004	26
AAGCCGT	20	7.031559E-4	45.000004	23
TACGATA	20	7.031559E-4	45.000004	25
CGCTAGC	20	7.031559E-4	45.000004	12
ACTACGC	20	7.031559E-4	45.000004	12
TTGCGGA	20	7.031559E-4	45.000004	37
GATGCGA	20	7.031559E-4	45.000004	16
CGGTCTA	30	2.1643864E-6	45.000004	31
CCGCGAA	20	7.031559E-4	45.000004	29
TAGGACG	20	7.031559E-4	45.000004	1
TAATGCG	30	2.1643864E-6	45.000004	1
ATCGATC	20	7.031559E-4	45.000004	13
TACGTCG	20	7.031559E-4	45.000004	3
TGCGTAG	30	2.1643864E-6	45.000004	1
TCGATAG	25	3.8893748E-5	45.0	1