SRR3552637_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552637_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	945106
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTGC	2846	0.30113024359172413	No Hit
GCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTGC	2567	0.2716097453618959	No Hit
CTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTGCT	2002	0.21182809124055926	Illumina Single End Adapter 2 (95% over 21bp)
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1943	0.20558540523496835	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1788	0.18918512844061935	No Hit
TTGAATGATACCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGC	1663	0.17595909876775725	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1527	0.16156917848368332	No Hit
TTGAATCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCT	1089	0.11522517050997455	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGC	1082	0.11448451284829426	No Hit
TCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTGC	1031	0.10908829274176653	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCG	1028	0.10877086802961786	No Hit
GAATCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTC	1001	0.10591404562027963	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATCTA	25	3.890277E-5	45.000004	37
GTAATCG	30	2.1650903E-6	45.000004	1
CGATCCA	30	2.1650903E-6	45.000004	16
TATCCGG	25	3.890277E-5	45.000004	2
CGTGATA	20	7.03265E-4	45.0	43
TTCGCCT	20	7.03265E-4	45.0	23
ACGACGT	20	7.03265E-4	45.0	9
AATCGTT	45	3.8380676E-10	45.0	22
CACGCTT	60	3.6379788E-12	41.250004	32
TAACGCG	55	6.002665E-11	40.909092	1
GTATGCG	55	6.002665E-11	40.909092	1
CGAATAT	105	0.0	40.714287	14
TCGTTGA	50	1.0804797E-9	40.500004	24
ATATGCG	50	1.0804797E-9	40.500004	1
TATCGTG	50	1.0804797E-9	40.500004	1
CATACGA	150	0.0	40.5	18
CGTTCAT	45	1.927765E-8	40.0	17
AATAGCG	45	1.927765E-8	40.0	1
ATAGCGG	120	0.0	39.375004	2
GTTAGCG	40	3.4573532E-7	39.375	1