##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552637_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 945106 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.79136625944603 31.0 31.0 34.0 30.0 34.0 2 31.94115157453238 33.0 31.0 34.0 30.0 34.0 3 31.96372787814277 33.0 31.0 34.0 30.0 34.0 4 35.60934223251149 37.0 35.0 37.0 33.0 37.0 5 35.431061701015544 37.0 35.0 37.0 33.0 37.0 6 35.4449754842314 37.0 35.0 37.0 33.0 37.0 7 35.78943737527854 37.0 35.0 37.0 35.0 37.0 8 35.54003677894332 37.0 35.0 37.0 35.0 37.0 9 37.276456820716405 39.0 37.0 39.0 34.0 39.0 10 36.88355062818351 39.0 37.0 39.0 32.0 39.0 11 36.83429583559939 39.0 37.0 39.0 33.0 39.0 12 36.71472300461536 39.0 35.0 39.0 33.0 39.0 13 36.56134549986986 39.0 35.0 39.0 32.0 39.0 14 37.68343762498598 40.0 36.0 41.0 33.0 41.0 15 37.786645095894 40.0 36.0 41.0 33.0 41.0 16 37.84071839560853 40.0 36.0 41.0 33.0 41.0 17 37.80699836843698 40.0 36.0 41.0 33.0 41.0 18 37.79318404496427 40.0 36.0 41.0 33.0 41.0 19 37.7451523956043 40.0 36.0 41.0 33.0 41.0 20 37.66381548736332 39.0 36.0 41.0 33.0 41.0 21 37.58463600908258 39.0 36.0 41.0 33.0 41.0 22 37.57996880773162 39.0 36.0 41.0 33.0 41.0 23 37.48844679856016 39.0 35.0 41.0 32.0 41.0 24 37.4980108051372 39.0 35.0 41.0 33.0 41.0 25 37.3406104712064 39.0 35.0 41.0 32.0 41.0 26 37.29827447926476 39.0 35.0 41.0 32.0 41.0 27 37.05197935469672 39.0 35.0 41.0 31.0 41.0 28 37.0830584082632 39.0 35.0 41.0 31.0 41.0 29 37.05393045859406 39.0 35.0 41.0 31.0 41.0 30 36.91520422047897 39.0 35.0 41.0 31.0 41.0 31 36.934037028650756 39.0 35.0 41.0 31.0 41.0 32 36.829187413898545 39.0 35.0 41.0 31.0 41.0 33 36.66566501535277 39.0 35.0 41.0 31.0 41.0 34 36.58759652356455 39.0 35.0 41.0 30.0 41.0 35 36.47979062665987 39.0 35.0 41.0 30.0 41.0 36 36.378640067886565 39.0 35.0 40.0 30.0 41.0 37 36.31279877601031 38.0 35.0 40.0 30.0 41.0 38 36.23007260561249 38.0 35.0 40.0 30.0 41.0 39 36.16579621756713 38.0 35.0 40.0 30.0 41.0 40 36.03402792914234 38.0 35.0 40.0 30.0 41.0 41 35.97161482415729 38.0 35.0 40.0 30.0 41.0 42 35.92341811394701 38.0 35.0 40.0 30.0 41.0 43 35.84375403393905 38.0 35.0 40.0 30.0 41.0 44 35.79718994483159 38.0 35.0 40.0 30.0 41.0 45 35.75325095809359 38.0 35.0 40.0 29.0 41.0 46 35.637868133309915 38.0 35.0 40.0 29.0 41.0 47 35.52688693120137 37.0 34.0 40.0 29.0 41.0 48 35.45804703387768 37.0 34.0 40.0 29.0 41.0 49 35.411908293884494 37.0 34.0 40.0 28.0 41.0 50 35.30949967516871 37.0 34.0 40.0 28.0 41.0 51 34.58373558098245 36.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 5.0 9 36.0 10 50.0 11 62.0 12 64.0 13 71.0 14 48.0 15 76.0 16 118.0 17 227.0 18 352.0 19 594.0 20 998.0 21 1687.0 22 2557.0 23 3867.0 24 5108.0 25 6215.0 26 7984.0 27 9905.0 28 11762.0 29 14221.0 30 18017.0 31 22944.0 32 30021.0 33 41115.0 34 67793.0 35 85574.0 36 88245.0 37 123631.0 38 181495.0 39 220141.0 40 121.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.77775402970672 19.772596936216676 24.200248437741376 15.249400596335224 2 29.930822574399063 26.409630242533645 26.952214883833136 16.70733229923416 3 32.72214968479726 25.167441535658437 26.126381591059626 15.984027188484678 4 28.960455229360516 27.412692332923505 24.619672290727177 19.0071801469888 5 25.443071994040878 31.033556024403612 23.645813273854994 19.877558707700512 6 24.609197275226272 35.465016622474096 24.007254212754972 15.918531889544665 7 80.47224332508735 6.628674455563714 8.076025334724358 4.823056884624582 8 80.41203843801648 6.851718219966861 7.2751627859732135 5.4610805560434486 9 75.08628661758576 7.922180157569628 10.341697121804327 6.649836103040293 10 40.13930712533832 26.534907195594993 16.876202246097264 16.449583432969423 11 30.860982789232104 27.110609815195332 20.954792372495785 21.073615023076776 12 26.916028466648186 22.76167964228351 29.08192308587608 21.240368805192222 13 25.36773652902426 24.456727605157518 29.469604467647017 20.70593139817121 14 21.562343271548375 27.933692093796886 27.320639166400383 23.183325468254353 15 20.935006232105184 26.106172217719493 31.37066106870552 21.588160481469803 16 22.556834894710224 24.974553118909412 29.35628384540993 23.11232814097043 17 22.141537562982354 24.006301938618527 27.785983794410363 26.06617670398876 18 23.40933186330422 24.23580000550203 27.44041409111782 24.914454040075928 19 25.161727890839757 26.122255069801692 26.308371759358213 22.407645280000338 20 25.582633059148918 25.287745501562785 26.45914849762884 22.670472941659455 21 24.787907388165983 26.656586668585327 26.77519770269155 21.780308240557144 22 23.33949842663151 24.480428650331284 25.77224142053907 26.40783150249813 23 22.41790867902648 27.377775614587147 25.92513432355736 24.279181382829016 24 22.46255975520206 25.789488163232484 27.190283417944656 24.5576686636208 25 23.426261181285486 27.064900656645925 25.793403068015653 23.715435094052943 26 21.941030953141762 27.267311814759402 26.155584664577308 24.636072567521527 27 23.23601797047104 26.701343552998285 27.025328375864717 23.037310100665955 28 21.447964566937465 26.781969429884057 27.901949622582016 23.86811638059646 29 23.038685607751937 26.48993869470726 26.03327034216268 24.438105355378127 30 22.854367658230927 26.708644321377705 27.227951150452967 23.209036869938398 31 25.39641056135502 26.7872598417532 22.976152939458643 24.840176657433137 32 24.781029852736093 27.898352142511 23.664858756583918 23.65575924816899 33 23.62772006526252 25.677014006894467 25.209553214136825 25.48571271370619 34 22.842199710931897 26.31673061011146 26.093051996284018 24.748017682672632 35 25.11146897808288 24.16765950062744 25.78250481956521 24.938366701724462 36 25.30171218889733 26.72123550162627 25.177810742921956 22.79924156655444 37 24.33959788637465 26.341278121184292 27.221391039735227 22.097732952705833 38 24.16448525350596 26.46115885413911 25.661989237186095 23.712366655168836 39 25.593002266412444 23.921972773424358 26.96988485947608 23.51514010068712 40 25.95772326067129 23.236229586945804 28.443264565032916 22.36278258734999 41 22.432827640497468 24.817427886395812 27.3403194985536 25.40942497455312 42 22.765065505879765 24.838801150347155 27.92046606412402 24.475667279649056 43 23.688136568808154 23.922607622848655 28.25630140957734 24.13295439876585 44 23.464246338505944 24.113803107799548 27.223930437432415 25.198020116262093 45 24.387317401434334 23.730988904948227 26.038137521082295 25.84355617253514 46 24.405093185314662 24.667709230499014 26.574796901088344 24.35240068309798 47 23.241202574102797 25.083853028125947 28.269210014538054 23.405734383233202 48 23.363516896517428 24.479264759720074 27.735407456941335 24.42181088682116 49 22.481287813218835 24.156761252177002 29.354167680662275 24.007783253941888 50 22.506575981953347 24.018575694154944 28.45172922402355 25.02311909986816 51 22.484356252102938 24.12290261621448 26.44549923500644 26.94724189667614 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1880.0 1 2350.0 2 2820.0 3 3374.5 4 3929.0 5 2944.0 6 1959.0 7 1893.5 8 1828.0 9 1874.0 10 1920.0 11 1985.0 12 2050.0 13 2076.5 14 2103.0 15 2160.5 16 2218.0 17 2242.0 18 2266.0 19 2398.5 20 2531.0 21 2804.0 22 3077.0 23 3277.0 24 3477.0 25 4057.5 26 5397.5 27 6157.0 28 8375.5 29 10594.0 30 12765.5 31 14937.0 32 14621.5 33 14306.0 34 17491.0 35 20676.0 36 21476.0 37 22276.0 38 24139.0 39 26002.0 40 30457.0 41 34912.0 42 39924.0 43 44936.0 44 52025.5 45 59115.0 46 68724.5 47 78334.0 48 82921.5 49 87509.0 50 86033.0 51 84557.0 52 75425.5 53 66294.0 54 60363.0 55 54432.0 56 51960.5 57 49489.0 58 47772.5 59 46056.0 60 44563.0 61 43070.0 62 40450.0 63 37830.0 64 33949.0 65 30068.0 66 26516.0 67 22964.0 68 19297.5 69 15631.0 70 13700.0 71 11769.0 72 10842.5 73 9916.0 74 8463.0 75 5437.5 76 3865.0 77 3338.5 78 2812.0 79 2119.5 80 1427.0 81 1192.5 82 958.0 83 596.5 84 235.0 85 154.5 86 74.0 87 126.5 88 179.0 89 93.0 90 7.0 91 7.0 92 7.0 93 5.5 94 4.0 95 2.5 96 1.0 97 0.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 945106.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.46886274694897 #Duplication Level Percentage of deduplicated Percentage of total 1 74.8756959583378 18.321231274868495 2 10.103070985909513 4.944213145538046 3 3.676380900886934 2.6987057900792095 4 1.8506651233362619 1.8113468357392155 5 1.06960339604007 1.3085989345687488 6 0.727109693648873 1.067492837752223 7 0.5009981592787215 0.8581198637105582 8 0.41930260285324894 0.8207886270923683 9 0.2985061174584748 0.6573694695494444 >10 4.52831043877992 29.498946013331324 >50 1.7823125037057999 29.272419928529153 >100 0.1571604332511407 5.653152542740779 >500 0.005659516986883184 1.0032484246458886 >1k 0.005224169526353708 2.0843663118545446 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTGC 2846 0.30113024359172413 No Hit GCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTGC 2567 0.2716097453618959 No Hit CTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTGCT 2002 0.21182809124055926 Illumina Single End Adapter 2 (95% over 21bp) TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 1943 0.20558540523496835 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1788 0.18918512844061935 No Hit TTGAATGATACCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGC 1663 0.17595909876775725 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1527 0.16156917848368332 No Hit TTGAATCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCT 1089 0.11522517050997455 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGC 1082 0.11448451284829426 No Hit TCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTGC 1031 0.10908829274176653 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCG 1028 0.10877086802961786 No Hit GAATCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTC 1001 0.10591404562027963 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.1161647476579347E-4 0.0 0.0 0.22505412091342136 0.0 2 2.1161647476579347E-4 0.0 0.0 1.0119499823300244 0.0 3 2.1161647476579347E-4 0.0 0.0 1.2984786891629088 0.0 4 2.1161647476579347E-4 0.0 0.0 1.6420380359451745 0.0 5 2.1161647476579347E-4 0.0 0.0 2.6990623274003127 0.0 6 2.1161647476579347E-4 0.0 0.0 3.576212615304527 0.0 7 2.1161647476579347E-4 0.0 0.0 4.425323720302273 0.0 8 2.1161647476579347E-4 0.0 0.0 5.404896381993131 0.0 9 2.1161647476579347E-4 0.0 0.0 5.86071826863865 0.0 10 2.1161647476579347E-4 0.0 0.0 6.902400365673269 0.0 11 2.1161647476579347E-4 0.0 0.0 8.073380128789786 0.0 12 2.1161647476579347E-4 0.0 0.0 9.375350489786332 0.0 13 2.1161647476579347E-4 0.0 0.0 9.790542013276818 0.0 14 2.1161647476579347E-4 0.0 0.0 10.008718598760352 0.0 15 3.174247121486902E-4 0.0 0.0 10.30424100577078 0.0 16 3.174247121486902E-4 0.0 0.0 10.878568118285145 0.0 17 3.174247121486902E-4 0.0 0.0 11.616792190505615 0.0 18 3.174247121486902E-4 0.0 0.0 12.424320658211883 0.0 19 3.174247121486902E-4 0.0 0.0 12.851680129001403 0.0 20 3.174247121486902E-4 0.0 0.0 13.241583483757378 0.0 21 3.174247121486902E-4 0.0 0.0 13.722481922662643 0.0 22 3.174247121486902E-4 0.0 0.0 14.197349292037083 0.0 23 3.174247121486902E-4 0.0 0.0 14.678459347417116 0.0 24 3.174247121486902E-4 0.0 0.0 15.067833660986174 0.0 25 3.174247121486902E-4 0.0 0.0 15.401235416979683 0.0 26 3.174247121486902E-4 0.0 0.0 15.716332347905949 0.0 27 3.174247121486902E-4 0.0 0.0 16.03566160832753 0.0 28 3.174247121486902E-4 0.0 0.0 16.373718926765886 0.0 29 3.174247121486902E-4 0.0 0.0 16.724684850164955 0.0 30 3.174247121486902E-4 0.0 0.0 17.113424314309718 0.0 31 3.174247121486902E-4 0.0 0.0 17.458464976415343 0.0 32 3.174247121486902E-4 0.0 0.0 17.814086462259258 0.0 33 3.174247121486902E-4 0.0 0.0 18.171400879901302 0.0 34 3.174247121486902E-4 0.0 0.0 18.517182199668607 0.0 35 3.174247121486902E-4 0.0 0.0 18.890791085867615 0.0 36 3.174247121486902E-4 0.0 0.0 19.232128459664843 0.0 37 4.2323294953158693E-4 0.0 0.0 19.583200191301295 0.0 38 4.2323294953158693E-4 0.0 0.0 19.911946384849955 0.0 39 4.2323294953158693E-4 0.0 0.0 20.256563814006046 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTATCTA 25 3.890277E-5 45.000004 37 GTAATCG 30 2.1650903E-6 45.000004 1 CGATCCA 30 2.1650903E-6 45.000004 16 TATCCGG 25 3.890277E-5 45.000004 2 CGTGATA 20 7.03265E-4 45.0 43 TTCGCCT 20 7.03265E-4 45.0 23 ACGACGT 20 7.03265E-4 45.0 9 AATCGTT 45 3.8380676E-10 45.0 22 CACGCTT 60 3.6379788E-12 41.250004 32 TAACGCG 55 6.002665E-11 40.909092 1 GTATGCG 55 6.002665E-11 40.909092 1 CGAATAT 105 0.0 40.714287 14 TCGTTGA 50 1.0804797E-9 40.500004 24 ATATGCG 50 1.0804797E-9 40.500004 1 TATCGTG 50 1.0804797E-9 40.500004 1 CATACGA 150 0.0 40.5 18 CGTTCAT 45 1.927765E-8 40.0 17 AATAGCG 45 1.927765E-8 40.0 1 ATAGCGG 120 0.0 39.375004 2 GTTAGCG 40 3.4573532E-7 39.375 1 >>END_MODULE