SRR3552636_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552636_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	708046
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGC	1326	0.18727596794558546	TruSeq Adapter, Index 13 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1270	0.1793668772932832	No Hit
CCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGC	1248	0.1762597345370216	TruSeq Adapter, Index 13 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1092	0.1542272677198939	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1001	0.14137499540990273	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	918	0.1296525931930976	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	897	0.12668668419848428	No Hit
CTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGCT	888	0.12541558034365	TruSeq Adapter, Index 16 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	35	1.2110468E-7	45.0	1
AAATCGT	20	7.031449E-4	45.0	12
CAAACGT	20	7.031449E-4	45.0	34
GTCGATT	20	7.031449E-4	45.0	40
GTCGATG	20	7.031449E-4	45.0	1
GTCGAAC	20	7.031449E-4	45.0	41
TCCGATC	20	7.031449E-4	45.0	14
ACGTTAG	25	3.8892835E-5	45.0	1
ATTCGCG	25	3.8892835E-5	45.0	1
CGTCTAA	20	7.031449E-4	45.0	38
CCGCTAA	25	3.8892835E-5	45.0	33
AATATCG	25	3.8892835E-5	45.0	1
ACGATAG	25	3.8892835E-5	45.0	1
CTAACGG	35	1.2110468E-7	45.0	2
TCTACCG	25	3.8892835E-5	45.0	1
CGCTAAT	25	3.8892835E-5	45.0	34
TACTAAC	20	7.031449E-4	45.0	15
ATAACGG	40	6.8084773E-9	45.0	2
GCCCGTA	20	7.031449E-4	45.0	40
TAGTCGT	25	3.8892835E-5	45.0	16