SRR3552635_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552635_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	804846
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	2950	0.36652974606322203	No Hit
CCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	1873	0.2327153269072593	No Hit
CTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGCT	1604	0.1992927839611553	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1418	0.17618277285344028	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1298	0.1612730882678177	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1287	0.15990636718080228	No Hit
TCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	1099	0.13654786132999355	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	970	0.12051995040044927	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	963	0.11965021879962129	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	817	0.10151010255378047	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTC	30	2.1646865E-6	45.000004	15
AAGTAAC	20	7.032024E-4	45.000004	23
TCACCCG	20	7.032024E-4	45.000004	19
GTCGAAC	20	7.032024E-4	45.000004	15
GACCGAA	20	7.032024E-4	45.000004	9
TAAACTA	20	7.032024E-4	45.000004	19
ATTGTCG	20	7.032024E-4	45.000004	14
ATTCGTT	20	7.032024E-4	45.000004	29
CATTCGT	20	7.032024E-4	45.000004	28
ATCGTTA	20	7.032024E-4	45.000004	11
TCTCGAC	30	2.1646865E-6	45.000004	20
CCGAACA	20	7.032024E-4	45.000004	41
TATACGG	40	6.8102963E-9	45.000004	2
GTTGCGT	30	2.1646865E-6	45.000004	27
GATACCC	25	3.889759E-5	45.0	19
TCAATCG	35	1.2113196E-7	45.0	13
TGACACG	25	3.889759E-5	45.0	30
AATTCGC	25	3.889759E-5	45.0	10
TCATCGA	25	3.889759E-5	45.0	16
TTCATCG	25	3.889759E-5	45.0	15