SRR3552631_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552631_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	685704
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC	1746	0.2546288194322915	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1499	0.21860744577835334	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1332	0.1942529137937069	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1063	0.15502315868071354	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1011	0.14743971159567393	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	972	0.14175212628189424	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	886	0.12921027148740566	No Hit
CTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGCT	788	0.1149183904425233	No Hit
CCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC	748	0.10908496960787746	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	692	0.10091818043937327	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCTA	20	7.031292E-4	45.000004	14
GTACCAT	20	7.031292E-4	45.000004	23
CGACGTA	20	7.031292E-4	45.000004	13
TCGATGT	20	7.031292E-4	45.000004	17
TCGATAG	20	7.031292E-4	45.000004	1
TCGTCTA	20	7.031292E-4	45.000004	18
AATTCGT	20	7.031292E-4	45.000004	42
AATTAGT	20	7.031292E-4	45.000004	36
CGTCGCA	20	7.031292E-4	45.000004	25
ACGTAGA	20	7.031292E-4	45.000004	15
ATTGCGA	20	7.031292E-4	45.000004	10
CGATAGA	30	2.1642154E-6	45.000004	10
ACGGTAT	20	7.031292E-4	45.000004	43
TATGGGT	190	0.0	45.0	4
CTACGTT	25	3.889154E-5	45.0	21
TTAACGG	45	3.8380676E-10	45.0	2
ACGTCCA	25	3.889154E-5	45.0	32
TTACGCG	50	2.1827873E-11	45.0	1
ATCGGGT	25	3.889154E-5	45.0	4
TGTCGTA	25	3.889154E-5	45.0	38