SRR3552624_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552624_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	550371
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1224	0.22239543871315895	No Hit
GCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCTGC	1088	0.19768483441169682	RNA PCR Primer, Index 27 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	953	0.17315592573009841	No Hit
CTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCTGCT	776	0.14099580101422496	RNA PCR Primer, Index 38 (96% over 26bp)
CCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCTGC	756	0.13736188861695112	RNA PCR Primer, Index 38 (96% over 25bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	644	0.11701197919221762	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	611	0.11101602373671579	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCC	579	0.10520176390107763	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAAGG	110	0.0	45.000004	2
GCGTAAG	90	0.0	45.000004	1
CGTGGTT	20	7.0300786E-4	45.0	16
TAGAGTA	25	3.888147E-5	45.0	5
TTCTACG	20	7.0300786E-4	45.0	1
CGTATTA	35	1.2103919E-7	45.0	17
ACGCATG	20	7.0300786E-4	45.0	1
CGTTGCC	20	7.0300786E-4	45.0	45
CCTACGC	20	7.0300786E-4	45.0	10
ATATGCG	20	7.0300786E-4	45.0	1
CTAAGAC	25	3.888147E-5	45.0	27
TCGATTG	25	3.888147E-5	45.0	1
TATTGCG	25	3.888147E-5	45.0	1
ACTAGTC	20	7.0300786E-4	45.0	32
TACGCAT	20	7.0300786E-4	45.0	16
TACGAGC	25	3.888147E-5	45.0	42
TCGCTAA	20	7.0300786E-4	45.0	30
CGAATAT	85	0.0	45.0	14
CTCGCTA	20	7.0300786E-4	45.0	29
CGTACGA	20	7.0300786E-4	45.0	40