SRR3552617_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552617_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	831485
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCG	4147	0.4987462191139948	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGC	4115	0.4948976830610294	No Hit
GAATCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTC	3676	0.4421005790844092	No Hit
GCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGC	2359	0.2837092671545488	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1549	0.18629319831386015	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1427	0.17162065461192927	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1188	0.14287690096634337	No Hit
GAATGACTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCT	1046	0.12579902223130907	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	941	0.11317101330751607	No Hit
CTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGCT	927	0.11148727878434368	TruSeq Adapter, Index 15 (95% over 23bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATAGAGCCT	874	0.10511314094661961	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACTCGA	30	2.1647738E-6	45.000004	45
AAGTACG	45	3.8380676E-10	45.0	1
ATCTACG	25	3.8898717E-5	45.0	1
GACGTAT	25	3.8898717E-5	45.0	19
CGTTGCC	20	7.0321606E-4	45.0	44
TATATCG	20	7.0321606E-4	45.0	28
GTTAGCG	25	3.8898717E-5	45.0	1
TAGCCGT	50	2.1827873E-11	45.0	44
GTCGTAT	20	7.0321606E-4	45.0	9
GTATCAC	20	7.0321606E-4	45.0	12
TATCGGC	20	7.0321606E-4	45.0	30
TCGAATA	20	7.0321606E-4	45.0	44
CCGTTCA	25	3.8898717E-5	45.0	38
GTTATCG	20	7.0321606E-4	45.0	1
GTACGAC	20	7.0321606E-4	45.0	1
CTCGAAT	135	0.0	41.666668	43
ACGCATT	55	6.002665E-11	40.909092	17
TCGTTTA	50	1.0804797E-9	40.5	38
CGTCATA	50	1.0804797E-9	40.5	38
TATAGCG	45	1.9272193E-8	40.0	1