##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552617_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 831485 Sequences flagged as poor quality 0 Sequence length 51 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.735700583895078 31.0 31.0 34.0 30.0 34.0 2 31.874464361954814 33.0 31.0 34.0 30.0 34.0 3 31.9277822209661 33.0 31.0 34.0 30.0 34.0 4 35.57941875078925 37.0 35.0 37.0 33.0 37.0 5 35.3745611766899 37.0 35.0 37.0 33.0 37.0 6 35.37614027913913 37.0 35.0 37.0 33.0 37.0 7 35.71822943288213 37.0 35.0 37.0 35.0 37.0 8 35.46525553678058 37.0 35.0 37.0 33.0 37.0 9 37.21928717896294 39.0 37.0 39.0 34.0 39.0 10 36.77602843106009 39.0 37.0 39.0 32.0 39.0 11 36.71504116129575 39.0 35.0 39.0 32.0 39.0 12 36.58996253690686 39.0 35.0 39.0 32.0 39.0 13 36.38853015989465 39.0 35.0 39.0 32.0 39.0 14 37.517269704203926 39.0 36.0 41.0 32.0 41.0 15 37.64477771697625 40.0 36.0 41.0 33.0 41.0 16 37.732526744318896 40.0 36.0 41.0 33.0 41.0 17 37.63038539480568 40.0 36.0 41.0 33.0 41.0 18 37.63449009903967 39.0 36.0 41.0 33.0 41.0 19 37.59421035857532 39.0 36.0 41.0 33.0 41.0 20 37.449624467067956 39.0 35.0 41.0 32.0 41.0 21 37.41415659933733 39.0 35.0 41.0 32.0 41.0 22 37.44335255596914 39.0 35.0 41.0 32.0 41.0 23 37.258271646511965 39.0 35.0 41.0 32.0 41.0 24 37.28585362333656 39.0 35.0 41.0 32.0 41.0 25 37.17108426489955 39.0 35.0 41.0 32.0 41.0 26 37.11839299566439 39.0 35.0 41.0 32.0 41.0 27 36.84322266787735 39.0 35.0 41.0 31.0 41.0 28 36.89998015598598 39.0 35.0 41.0 31.0 41.0 29 36.864309037445054 39.0 35.0 41.0 31.0 41.0 30 36.75111036278466 39.0 35.0 41.0 31.0 41.0 31 36.73316536077019 39.0 35.0 41.0 31.0 41.0 32 36.55236594767194 39.0 35.0 40.0 30.0 41.0 33 36.43852865656025 39.0 35.0 40.0 30.0 41.0 34 36.301174404829915 39.0 35.0 40.0 30.0 41.0 35 36.17909763856233 38.0 35.0 40.0 30.0 41.0 36 36.15807140237046 38.0 35.0 40.0 30.0 41.0 37 36.06537219552968 38.0 35.0 40.0 30.0 41.0 38 35.948323782148805 38.0 35.0 40.0 29.0 41.0 39 35.911593113525804 38.0 35.0 40.0 29.0 41.0 40 35.8295002315135 38.0 35.0 40.0 29.0 41.0 41 35.75403164218236 38.0 35.0 40.0 29.0 41.0 42 35.693272879246166 38.0 35.0 40.0 29.0 41.0 43 35.642463784674405 38.0 35.0 40.0 29.0 41.0 44 35.59717733933865 38.0 35.0 40.0 29.0 41.0 45 35.51143917208368 38.0 34.0 40.0 29.0 41.0 46 35.36157838084872 37.0 34.0 40.0 28.0 41.0 47 35.25020776081348 37.0 34.0 40.0 28.0 41.0 48 35.202941724745486 37.0 34.0 40.0 28.0 41.0 49 35.170777584682824 37.0 34.0 40.0 28.0 41.0 50 35.07667366218272 37.0 34.0 40.0 28.0 41.0 51 34.39168114878801 36.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 6.0 9 26.0 10 41.0 11 35.0 12 37.0 13 40.0 14 52.0 15 67.0 16 124.0 17 194.0 18 340.0 19 627.0 20 1194.0 21 2053.0 22 3124.0 23 4630.0 24 5704.0 25 6804.0 26 8056.0 27 9111.0 28 10905.0 29 13091.0 30 16489.0 31 21654.0 32 27681.0 33 37611.0 34 60299.0 35 75670.0 36 77212.0 37 105533.0 38 155835.0 39 187143.0 40 97.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.867814813255805 18.929625910268978 21.896726940353705 13.305832336121517 2 29.275573221405075 27.770795624695577 24.81848740506443 18.135143748834917 3 31.65601303691588 27.520039447494543 24.658171825108088 16.16577569048149 4 27.60747337594785 25.785792888626975 27.319193972230405 19.287539763194765 5 26.952139846178824 29.60101505138397 23.084240846196867 20.362604256240342 6 24.146677330318646 37.70266450988292 22.672567755281214 15.47809040451722 7 79.91196473778841 5.945507134825042 9.719477801764313 4.4230503256222296 8 81.17332242914786 7.402178030872475 6.525313144554621 4.899186395425053 9 76.21688905993493 6.968135324148962 8.456436375881706 8.358539240034396 10 42.51309404258646 25.9386519299807 15.310077752454946 16.2381762749779 11 32.819233058924695 25.21224074998346 21.6268483496395 20.34167784145234 12 27.173069868969375 21.761667378244947 27.939409610516126 23.125853142269552 13 25.679717613667112 23.304449268477484 29.855018430879692 21.160814686975712 14 20.695863425076823 28.992224754505493 26.87204218957648 23.439869630841205 15 20.218765221260757 24.8421799551405 32.1251736351227 22.81388118847604 16 22.378756080987632 23.23156761697445 29.594520646794592 24.795155655243327 17 22.020721961310187 24.145234129298785 28.09491452040626 25.739129388984765 18 23.375647185457343 23.650817513244377 27.67530382388137 25.29823147741691 19 24.525036531025815 27.00686121818193 24.328520658821265 24.13958159197099 20 27.703325977017023 24.97375178145126 25.367144326115326 21.955777915416395 21 24.5537802846714 28.316325610203428 24.72191320348533 22.40798090163984 22 23.023145336356038 23.69026500778727 25.864808144464423 27.42178151139227 23 23.28881459076231 27.73315213142751 24.84939596023981 24.12863731757037 24 23.427602422172377 26.007925578934078 26.84029176713952 23.72418023175403 25 23.36109490850707 27.385942019399028 25.062749177676086 24.19021389441782 26 21.65198410073543 26.54672062634924 26.810104812474066 24.99119046044126 27 23.552319043638793 25.25866371612236 26.414667733031866 24.774349507206985 28 21.165745623793576 27.527255452593852 27.82275086141061 23.484248062201964 29 23.392364263937413 25.94755166960318 26.305104722274002 24.354979344185406 30 23.10973739754776 26.894291538632686 26.469990438793246 23.525980625026307 31 24.757632428726918 26.98208626734096 22.764692087049074 25.495589216883047 32 26.37293517020752 27.94975255115847 23.449009903967 22.22830237466701 33 24.8317167477465 25.795775029014358 23.231928417229415 26.14057980600973 34 23.48436832895362 27.351786261928957 24.475486629343884 24.688358779773537 35 24.708804127554917 25.158601778745254 24.48631063699285 25.646283456706975 36 24.142467994010715 29.452846413344798 22.897707114379696 23.50697847826479 37 24.602247785588435 26.735419159696207 25.807200370421597 22.855132684293764 38 23.278952717126586 28.37742112004426 23.730794903095067 24.61283125973409 39 26.205163051648555 25.293060007095736 23.49531260335424 25.006464337901463 40 24.623895800886366 24.251068870755336 26.15717661773814 24.967858710620156 41 20.95960841145661 25.184459130351115 25.51940203371077 28.3365304244815 42 22.567093814079627 25.257220515102496 25.48584760999898 26.6898380608189 43 22.84154254135673 24.72395773826347 26.028851993722075 26.405647726657726 44 23.374805318195758 24.50170478120471 26.711365809365173 25.412124091234357 45 24.204766171368096 24.891008256312503 25.70930323457429 25.19492233774512 46 24.67188223479678 26.037390933089593 25.052646770537052 24.23808006157658 47 22.422653445341766 26.320258332982554 27.63296992729875 23.624118294376927 48 23.42279175210617 25.067800381245604 25.437139575578634 26.072268291069594 49 22.68507549745335 24.154374402424576 27.92557893407578 25.23497116604629 50 22.88928844176383 24.263576612927473 27.692020902361435 25.155114042947258 51 22.594033566450385 24.30530917575182 25.378449400770908 27.722207857026888 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1757.0 1 1964.0 2 2171.0 3 2774.5 4 3378.0 5 2471.0 6 1564.0 7 1606.0 8 1648.0 9 1716.0 10 1784.0 11 1803.5 12 1823.0 13 1981.5 14 2140.0 15 2102.0 16 2064.0 17 1960.0 18 1856.0 19 1835.5 20 1815.0 21 2006.5 22 2198.0 23 2410.0 24 2622.0 25 3249.5 26 4526.5 27 5176.0 28 6710.5 29 8245.0 30 8865.5 31 9486.0 32 11291.0 33 13096.0 34 15100.0 35 17104.0 36 17756.5 37 18409.0 38 20743.0 39 23077.0 40 25758.5 41 28440.0 42 31208.0 43 33976.0 44 39881.5 45 45787.0 46 59613.5 47 73440.0 48 73697.0 49 73954.0 50 72670.5 51 71387.0 52 67246.0 53 63105.0 54 56303.0 55 49501.0 56 47856.5 57 46212.0 58 43355.5 59 40499.0 60 40372.5 61 40246.0 62 37592.0 63 34938.0 64 30665.5 65 26393.0 66 23614.0 67 20835.0 68 18574.5 69 16314.0 70 14134.5 71 11955.0 72 11156.0 73 10357.0 74 8807.5 75 5933.0 76 4608.0 77 3854.0 78 3100.0 79 2660.0 80 2220.0 81 1608.0 82 996.0 83 723.0 84 450.0 85 301.0 86 152.0 87 90.0 88 28.0 89 22.0 90 16.0 91 22.0 92 28.0 93 14.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 831485.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.970757100396618 #Duplication Level Percentage of deduplicated Percentage of total 1 75.60475481119684 18.87907968025439 2 9.489924206984655 4.739411845475757 3 3.40023241435134 2.5471913311098735 4 1.6700783462108497 1.6681248288745287 5 1.0154026278223889 1.267768618922865 6 0.7015733875737322 1.0511291189523648 7 0.49059885178996304 0.8575437333246455 8 0.4021928264016815 0.8034447500478699 9 0.3299937367309708 0.7416174100105171 >10 5.192946929337175 33.72392482684054 >50 1.5826885345644564 25.78598081398949 >100 0.10940243326457069 4.429015421307186 >500 0.00632102947750853 1.137304332786458 >1k 0.0038898642938514027 2.368463288103495 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCG 4147 0.4987462191139948 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGC 4115 0.4948976830610294 No Hit GAATCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTC 3676 0.4421005790844092 No Hit GCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGC 2359 0.2837092671545488 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1549 0.18629319831386015 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1427 0.17162065461192927 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 1188 0.14287690096634337 No Hit GAATGACTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCT 1046 0.12579902223130907 No Hit GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 941 0.11317101330751607 No Hit CTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGCT 927 0.11148727878434368 TruSeq Adapter, Index 15 (95% over 23bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATAGAGCCT 874 0.10511314094661961 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.11822221687703326 0.0 2 0.0 0.0 0.0 0.6639927358882001 0.0 3 0.0 0.0 0.0 0.8685664804536462 0.0 4 0.0 0.0 0.0 1.223233131084746 0.0 5 0.0 0.0 0.0 2.4488715972025954 0.0 6 0.0 0.0 0.0 3.2034251970871392 0.0 7 0.0 0.0 0.0 3.9125179648460287 0.0 8 0.0 0.0 0.0 5.016085678033879 0.0 9 0.0 0.0 0.0 5.526858572313391 0.0 10 0.0 0.0 0.0 7.005418017162065 0.0 11 0.0 0.0 0.0 8.0551062256084 0.0 12 0.0 0.0 0.0 9.453086946848108 0.0 13 0.0 0.0 0.0 9.82687601099238 0.0 14 0.0 0.0 0.0 9.993445462034794 0.0 15 0.0 0.0 0.0 10.304816082070031 0.0 16 0.0 0.0 0.0 10.78480068792582 0.0 17 0.0 0.0 0.0 11.370138968231538 0.0 18 0.0 0.0 0.0 12.083922139304978 0.0 19 0.0 0.0 0.0 12.556450206558146 0.0 20 0.0 0.0 0.0 12.928074469172625 0.0 21 0.0 0.0 0.0 13.345039297161103 0.0 22 0.0 0.0 0.0 13.763206792666134 0.0 23 0.0 0.0 0.0 14.20013590142937 0.0 24 1.2026675165517117E-4 0.0 0.0 14.54734601345785 0.0 25 1.2026675165517117E-4 0.0 0.0 14.850538494380537 0.0 26 1.2026675165517117E-4 0.0 0.0 15.129677624972189 0.0 27 1.2026675165517117E-4 0.0 0.0 15.439845577490875 0.0 28 1.2026675165517117E-4 0.0 0.0 15.734980186052665 0.0 29 1.2026675165517117E-4 0.0 0.0 16.04490760506804 0.0 30 2.4053350331034235E-4 0.0 0.0 16.414487332904383 0.0 31 2.4053350331034235E-4 0.0 0.0 16.71960408185355 0.0 32 2.4053350331034235E-4 0.0 0.0 17.04660937960396 0.0 33 2.4053350331034235E-4 0.0 0.0 17.350643727788235 0.0 34 2.4053350331034235E-4 0.0 0.0 17.65732394450892 0.0 35 2.4053350331034235E-4 0.0 0.0 18.000204453477814 0.0 36 3.6080025496551353E-4 0.0 0.0 18.314100675297812 0.0 37 3.6080025496551353E-4 0.0 0.0 18.63112383266084 0.0 38 3.6080025496551353E-4 0.0 0.0 18.95596432888146 0.0 39 3.6080025496551353E-4 0.0 0.0 19.278279223317316 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACTCGA 30 2.1647738E-6 45.000004 45 AAGTACG 45 3.8380676E-10 45.0 1 ATCTACG 25 3.8898717E-5 45.0 1 GACGTAT 25 3.8898717E-5 45.0 19 CGTTGCC 20 7.0321606E-4 45.0 44 TATATCG 20 7.0321606E-4 45.0 28 GTTAGCG 25 3.8898717E-5 45.0 1 TAGCCGT 50 2.1827873E-11 45.0 44 GTCGTAT 20 7.0321606E-4 45.0 9 GTATCAC 20 7.0321606E-4 45.0 12 TATCGGC 20 7.0321606E-4 45.0 30 TCGAATA 20 7.0321606E-4 45.0 44 CCGTTCA 25 3.8898717E-5 45.0 38 GTTATCG 20 7.0321606E-4 45.0 1 GTACGAC 20 7.0321606E-4 45.0 1 CTCGAAT 135 0.0 41.666668 43 ACGCATT 55 6.002665E-11 40.909092 17 TCGTTTA 50 1.0804797E-9 40.5 38 CGTCATA 50 1.0804797E-9 40.5 38 TATAGCG 45 1.9272193E-8 40.0 1 >>END_MODULE