SRR3552611_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552611_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	623205
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1691	0.27133928643062877	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1449	0.23250776229330636	No Hit
GCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC	938	0.15051227124300992	TruSeq Adapter, Index 14 (95% over 21bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	837	0.13430572604520183	No Hit
CCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC	712	0.11424812060237001	TruSeq Adapter, Index 14 (95% over 21bp)
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	658	0.10558323505106665	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAG	25	3.8887418E-5	45.000004	1
CGTATGG	25	3.8887418E-5	45.000004	2
TGTTACG	25	3.8887418E-5	45.000004	1
CTTAACG	20	7.0307986E-4	45.0	24
CGTGGTA	20	7.0307986E-4	45.0	45
AACGTAA	20	7.0307986E-4	45.0	26
TACGGGT	35	1.2107375E-7	45.0	4
TACGCGT	20	7.0307986E-4	45.0	15
CCGTAAT	20	7.0307986E-4	45.0	14
TTAACGC	20	7.0307986E-4	45.0	25
GACTCGT	20	7.0307986E-4	45.0	10
GTAAGCG	60	0.0	44.999996	1
CGTAAGG	85	0.0	42.35294	2
ATGGGTC	60	3.6379788E-12	41.249996	5
GTAGTAG	105	0.0	40.714287	1
CGTTAGG	45	1.925946E-8	40.0	2
TATGGGA	315	0.0	38.57143	4
TATGGGC	280	0.0	38.571426	4
GGATCGT	70	0.0	38.571426	8
ACTCGAG	35	6.2436866E-6	38.571426	1