SRR3552608_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552608_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	793585
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC	1626	0.2048929856285086	Illumina Single End Adapter 2 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1614	0.20338086027331664	No Hit
CCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC	1564	0.19708033796001687	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1349	0.16998809201282786	No Hit
CTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGCT	1048	0.1320589476867632	Illumina Single End Adapter 2 (95% over 22bp)
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	999	0.12588443581972947	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	829	0.10446265995451022	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAG	20	7.031964E-4	45.000004	1
CACGGCA	20	7.031964E-4	45.000004	12
TGATTCG	20	7.031964E-4	45.000004	1
CTATTCG	20	7.031964E-4	45.000004	25
CGACTCG	20	7.031964E-4	45.000004	2
ATACCGG	40	6.8102963E-9	45.000004	2
ACGAACA	20	7.031964E-4	45.000004	35
TCGTTGC	45	3.8380676E-10	45.0	16
ACGATAG	25	3.8897102E-5	45.0	1
CGGTCTA	25	3.8897102E-5	45.0	31
ACGCATA	30	2.1646501E-6	44.999996	17
ACGCATT	165	0.0	40.909092	17
TAACGCA	50	1.0804797E-9	40.5	26
CGCTACA	195	0.0	40.384617	28
ACGACCA	410	0.0	40.060974	28
ACACGAC	355	0.0	39.929577	26
ACCGCTA	170	0.0	39.705883	26
CGACCAA	420	0.0	39.642857	29
CGACAAT	40	3.4564255E-7	39.375004	20
TACGAAG	40	3.4564255E-7	39.375004	1