SRR3552596_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552596_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	520174
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1428	0.2745235248205408	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1357	0.26087424592540187	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	690	0.13264792165698402	No Hit
GCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGC	685	0.13168670483338268	TruSeq Adapter, Index 21 (95% over 21bp)
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	650	0.12495818706817334	No Hit
CCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGC	610	0.11726845247936267	TruSeq Adapter, Index 21 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCAAT	20	7.0297206E-4	45.000004	22
CAACGGA	20	7.0297206E-4	45.000004	3
GCAACGC	20	7.0297206E-4	45.000004	13
CAAATCG	20	7.0297206E-4	45.000004	1
GCGATAT	20	7.0297206E-4	45.000004	9
CAGTACG	20	7.0297206E-4	45.000004	1
ATCGCTT	20	7.0297206E-4	45.000004	25
GTACGCG	20	7.0297206E-4	45.000004	1
TTATCGC	25	3.8878516E-5	45.0	24
CTAACGG	25	3.8878516E-5	45.0	2
TTCGGAA	25	3.8878516E-5	45.0	32
TATGTCG	25	3.8878516E-5	45.0	5
CGATAGA	25	3.8878516E-5	45.0	10
TCAACGA	25	3.8878516E-5	45.0	21
GTAAGCG	30	2.1632022E-6	44.999996	1
CCAATCT	60	3.6379788E-12	41.249996	16
TCGCGCG	45	1.9248546E-8	40.000004	1
GATAACG	40	3.4533514E-7	39.375004	1
TACGCAT	115	0.0	39.130436	16
GGCACAT	75	0.0	39.0	8